Aeromonas caviae: VI35_10760
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Entry
VI35_10760 CDS
T05190
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acav
Aeromonas caviae
Pathway
acav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VI35_10760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acav03019
]
VI35_10760
03009 Ribosome biogenesis [BR:
acav03009
]
VI35_10760
Enzymes [BR:
acav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VI35_10760
Messenger RNA biogenesis [BR:
acav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VI35_10760
Ribosome biogenesis [BR:
acav03009
]
Prokaryotic type
rRNA processing factors
VI35_10760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ATP90655
LinkDB
All DBs
Position
complement(2288482..2291625)
Genome browser
AA seq
1047 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQQRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KSHIELVRPDFLNRVKLYKGDVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHAQVPVDVAAYLLNEKRTSIANLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPRQAQVVEREQPLLQGFAPAPQPVAPTAPA
PVATPAPVAEQVGFFGKLAKAFSGLFGASSDAAPAEVKAPADKPAAQREARKDDGHRHQR
DESRSRGQRGRRDDNRGSRNAEAGEKREGAASRESSDRNRRPRKEREPRQEREPRQEREP
RGEVRTEQRMEREPREPRQEREPRAPRPAREPRAPREPRAEVSVEAVDTVDTAVASAEPR
QEKEQKVAERRERRQLRKQIRVDVAATDTPALPTDEQITDVADVQAAAEQQEEQGEGQRR
SRRTPRNQRIEGQRRKRINEDARGQREDEAQGEVQLTTAAQADAAQVKVEEPVVPVITIP
SAEAVAAALQASAALTEHVVAEAVAEEAAEQALAAQAVDAPSTDEVEQVAQADAEPVAEV
AVVEPEMVEPIVDTASHDEPVAVIDAVEQTQQVEAIPEEVAPVAEAAPVVIAEETATAEA
EVVEMPAAVVQTEPATSPEVKVSKGAGVLARARKAYAPMATPAAAPAPTPREPVEYAPLV
RSEVVTSGRHGGSTAASNVATSPAGRP
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaggagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccgggacacgagcagaaaaaagcgaac
atttacaagggcaaaatcacccgagtagaacccagtctcgaagctgcttttgttgactat
ggcgccgaacgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtc
attgtccagatcgacaaggaagagcgtggtaccaagggtgcagccctcaccaccttcatc
agtctggctggcagctacctggtgctgatgccgaacaaccctcgtgccggcggcatctcc
cgtcgcatcgagggtgacgagcggaccgagctgaaggaagccctgagcggactgaccgtg
ccggacggcatgggcctcatcgtgcgcaccgccggtgtgggcaagtccccggaagagctg
gagtgggatctgaacgttctgctcaatcactgggactccatccacaaggcgtcacaacaa
cgttccgctccggtgctcattcaccaggaaagcaacgtcatcgtgcgcgccatccgtgac
tatctgcgtcgcgatgtgggcgagatcctgatcgacaacccggtcatcttcgagcgcgcc
aagtcacatatcgagctggtccgccccgatttcctcaatcgcgtgaagctgtacaagggc
gatgtcgccctgttcaaccacttccagatcgagagccagatcgaatcggccttccagcgc
gaagtgcgcctgccctccggcggcagcatcgtcatcgatccgaccgaagcactgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagaccgccctgcag
accaacctggaagcagcagacgagattgcccgtcaattgcgtctgcgtgacctgggtggc
ctgattgtcatcgacttcatcgacatgaccccggttcgccatcagcgcgaagtggaaaac
cgtctgcgtgaagcggtgcatcaggatcgtgcccgtatccagctgggccgtatctcccgt
ttcggtctgctggagatgtctcgccagcgtctgcgtccctccctcaacgagtccagcagc
catatctgcccccgttgccagggtcagggggtcatccgtgacaacgaatccctcgccctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcatgcc
caggtgccggtcgatgtggccgcctatctgctcaacgagaagcgtacctccatcgccaat
ctggaacagcgcaatgatgtgcgtgtctacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcatccgtcagaacgagatcccggaagcggccagctacgagctc
aaaaccgagattgccaagccggtctatcagccgcgccaggctcaggtagtcgagcgcgaa
cagccgctgctgcaagggtttgccccggctccccagccggttgcgcccaccgccccggct
cctgttgcgactcccgctccggttgcagaacaagtcggcttctttggcaagctggccaag
gccttctccggcctgttcggtgcctcctccgatgcggctccggccgaggtgaaggcgcct
gccgacaaaccggccgcccagcgcgaagctcgcaaggatgacgggcaccgtcaccagcgc
gatgaatcccgcagccgtggtcaacgtggccgtcgcgatgacaaccgcggcagtcgcaat
gccgaggccggcgagaagcgtgaaggcgcagccagccgcgagagcagtgatcgcaatcgt
cgcccgcgcaaagagcgtgagcctcgtcaagagcgggaaccgcgccaggaacgggaaccc
cgtggcgaagtgcgcaccgaacagcgcatggagcgtgagcctcgcgaaccccgccaggag
cgcgaacctcgtgccccgcgtccggctcgtgaacctcgcgcgccccgcgaaccccgtgca
gaggtgagcgtcgaggcggttgataccgttgatactgctgtcgccagcgctgaaccgcgt
caggaaaaagagcaaaaagtggccgagcgccgcgaacgtcgccaactgcgcaagcagatc
cgtgtcgatgtcgccgcaaccgacacccctgccctgccgactgacgagcaaatcaccgat
gtcgccgacgtgcaagctgccgctgagcagcaagaagagcaaggcgaaggtcagcgtcgt
tcccgccgtaccccgcgcaatcagcgcatcgaagggcaacgtcgcaagcgcatcaacgaa
gatgctcgtggccagcgtgaagacgaagcacaaggtgaagtgcagctgactaccgcggcc
caggccgatgcggctcaggtgaaggtggaagaaccggttgtgcctgtcatcaccattccg
agcgcagaagcggttgctgccgccctgcaggcctccgccgcactgaccgaacacgtggtg
gctgaagccgttgctgaggaagcggcagagcaagcactggcagcccaggctgtggacgcg
ccctccactgacgaagttgagcaggttgcgcaagcagacgctgaacccgtcgccgaagtg
gcagttgtcgaacccgagatggtcgaacctatcgtcgacaccgcctctcatgacgaacct
gtcgccgtgatcgacgctgtcgagcagacccagcaagttgaggccatcccagaagaggtt
gcaccggttgctgaagcggcacctgtcgtgatcgctgaggagacggccaccgccgaggcg
gaggtcgtcgagatgccggctgccgtggtgcaaaccgagccagcaaccagccccgaagtg
aaggtcagcaagggtgccggtgtattggcccgtgcccgcaaggcttatgcccccatggca
acgccggctgcggctcctgccccgacaccccgtgaacccgtggagtacgctcccctggta
cgcagcgaagtcgtgacctccggtcgccacggtggcagcaccgctgccagcaacgtggca
accagcccggccggtcgcccctga
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