Aeromonas caviae: VI35_12615
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Entry
VI35_12615 CDS
T05190
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acav
Aeromonas caviae
Pathway
acav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VI35_12615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acav03019
]
VI35_12615
03009 Ribosome biogenesis [BR:
acav03009
]
VI35_12615
Enzymes [BR:
acav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VI35_12615
Messenger RNA biogenesis [BR:
acav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VI35_12615
Ribosome biogenesis [BR:
acav03009
]
Prokaryotic type
rRNA helicases
VI35_12615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ATP90923
LinkDB
All DBs
Position
complement(2700698..2702629)
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AA seq
643 aa
AA seq
DB search
MLAACLNLEESMSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLL
GQAQTGTGKTAAFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAHHMPDFHVL
PIYGGASYETQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFI
DDVDWIMDQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQV
TGLHKLDAMTRLLEVESYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERT
VDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAIL
FVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMGEELEIYHNLV
NELIEEDSADPLELAAALAKLVQGDQPLLLDDSIPDPVFNAGNDRGGFERREFNDRGGRD
FGDRGDRPARRMPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRF
IGNIDIADDFSTVDLPKGMSAEVLEVIKKARVCQRPLQITRYTEVPAGGNTAPRPPRGDR
PFRGDRPFNKDRRPQGDRPFNKDRREGGFDKGRKFGGNKRRDS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
gtgttagccgcctgccttaatctggaagaatctatgtctgataccgaacaactgcccctt
tttagtgagcttggactggccgcgcctgtattgaaagcgctgcaggacgtgggctatgag
cgcccgtctcccatccaggccgcagcaattccccacctgatggcgggacacgatctgctg
gggcaggcacaaaccggtacagggaagaccgctgcttttgccttgcctctgttgtctcgt
ctggaagctggtaaccgcaacacccagatcctggtgctggccccgacccgcgagctggcc
ctgcaggtggcagaggcgtgccaacgctatgcccaccacatgcccgatttccacgtgctg
cccatctacggcggcgcttcctacgaaacccagacccgcgccctgcgccgcggtgctcag
gttgtcgtgggtaccccgggccgcgtgatggacctgatccgtcgcaagaacctggacctc
tccggtctgaaagccctggtgctggacgaagcggacgaaatgctgcgcatgggcttcatc
gacgacgtggactggatcatggatcagtgcccggccggtcgtcaggttgccctgttctct
gccaccatgccggagcagatccgtcgtgttgcccagaagcacctgaagcagcccaaagag
atcaagatcgcctccaagaccgcgaccgcaaccaccattcgccagcgttactggcaggtg
accggtctgcacaagctggacgccatgacccgtctgctggaagtggaatcctacgaagcc
ctgctggtgttcgtgcgtaccaagaacgccgccgaagaactggcaggcaagctggccgcc
cgtggtcacgcctgtgaagcgctgcacggcgacatcccgcagaagctgcgtgagcgtacc
gtcgacaagctgcgtcagggccagctggacattcttatcgccaccgacgtggtcgcccgc
ggtctggacgttgagcgcatcacccacgtggtgaactacgacatcccctacgacaccgaa
tcctatgttcaccgtatcggccgtaccggccgtgccggtcgcaagggtgaagccatcctg
ttcgtggcaccgcgcgagcgtcgcatgctgcgcgccatcgagcacgcaactcgtcaagcc
atcgagccgatgaagatgccgagcaccgaggacatcaaccagcaccgtctggccaagttc
aaggagcgcatccgcgaaaccatgatgggtgaagagctcgagatctaccacaacctggtg
aacgagctgatcgaagaagactctgccgatccgctggagctggctgctgcactggccaag
ctggtacagggcgatcaaccgctgctgctggatgactccattccggatccggtgttcaac
gctggcaacgatcgcggtggcttcgagcgtcgtgagttcaacgaccgtggcggtcgtgac
ttcggtgaccgtggcgatcgtccggcccgtcgcatgccgtccctcgaaccgcgtccgctg
aaagacaacccggacgtggagatggagcgttaccgtgtcgacgtgggcgcccatcacggc
gtcaagccgggccagatcgtgggtgccatcgccaacgaggcgaacatcgagagccgcttc
atcggcaacatcgacatcgccgatgacttctccaccgtcgatctgcccaagggcatgagc
gccgaggtgctggaagtgatcaagaaggcccgtgtctgccagcgtccgctgcagatcacc
cgttacaccgaagtgccggccggcggcaacactgctccccgtccgccccgtggtgatcgt
ccgttccgtggcgaccgtcctttcaacaaggatcgccgtccccagggtgaccgtcccttc
aacaaggatcgccgtgaaggcggtttcgacaagggtcgcaaattcggtggcaacaagcgc
cgcgacagctaa
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