Aeromonas caviae: VI35_15470
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Entry
VI35_15470 CDS
T05190
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
acav
Aeromonas caviae
Pathway
acav03030
DNA replication
acav03430
Mismatch repair
acav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VI35_15470
03430 Mismatch repair
VI35_15470
03440 Homologous recombination
VI35_15470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acav03032
]
VI35_15470
03400 DNA repair and recombination proteins [BR:
acav03400
]
VI35_15470
Enzymes [BR:
acav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VI35_15470
DNA replication proteins [BR:
acav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VI35_15470
DNA repair and recombination proteins [BR:
acav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VI35_15470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ATP92409
LinkDB
All DBs
Position
complement(3363938..3367417)
Genome browser
AA seq
1159 aa
AA seq
DB search
MADPRFIHLRVHSDFSMVDGLQKIGPIVSAAAANNMPALALTDQMNMCGLVRFYGSAHGK
GIKPLVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKTW
LGEHAKGVIVLSGGREGDVGKFLLKGNRQMVEHCLAFYQTHFPDAYYLELLRTGRPDEEV
YLHMAVAIATEFELPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYL
RSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDMTTEDFLVMKSKEGL
EERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSE
MYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPGMTLAKAFEAEPK
LPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFALL
QRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGKEA
ISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEM
AKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVNEDGHIVYGIGAVKG
VGEGPIEAILDARDRDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLGPHRAALMA
TLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVPHWPDKVWLEGERETLGLY
LTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRGNKMGIFTLDD
RSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELLDINDARERFA
RAIRISLDEQRIDERFFPRLCEILEPARAGVCPVQVNYRRPGSRVRLTLGTEWRVTPTDQ
LIDDLRVLLGRERVELVFD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggctgatccccgtttcatccacctgagggtgcattccgacttctccatggtcgacggc
ctgcagaagatcggtcccatcgtctccgctgccgccgccaacaacatgccggccctggcc
ctgacggaccagatgaacatgtgcggcctggtgcgcttctacggctctgcccacggcaag
gggatcaagcccctggtcggggcggatttctgggtgcagagcgacgagcttggggacgag
cagtttcgcctcaccctgctcgccatggacaacgacggctaccagaacatcaccctgctc
atctcccgcggctatcagcgcggtcatgtgcaggggcgccccgtcatcgacaagacctgg
cttggcgaacatgccaagggggtgatcgtcctctccggcgggcgcgagggggatgtgggc
aagttcctgctcaagggcaaccgccagatggtggagcattgcctcgccttctaccagacc
cacttcccggatgcctactacctggagctgctgcgtaccggccgcccggacgaggaggtc
tacctgcacatggcggtggccattgccaccgagttcgaactgccggtggtggccaccaac
gaggtggtgttcctcaccgccgatgacttcgatgcccacgagatccgggtcgccatccac
gacggctacaccctgatggacaagcgccgaccgcgccgctacagcccccagcagtacctg
cgcagtcaggaggagatggcggagctgtttgccgacatcccggaagccctggaaaacacg
gtggagatcgccaagcgctgcaacgtgacggtgcgccttggcgaatacttcctgcccaac
ttccccaccggcgacatgaccaccgaggacttcctggtcatgaagtcgaaggaagggctg
gaggagcggctggagttcctgttcccggatccggcggtgcgggccgagcgtcgtcccgag
tatgacgagcgtctcgacatcgagctcaaagtgatcaaccagatgggcttcccgggttac
ttcctcatcgtgatggagtttatccagtggtccaaggacaacggcatccccgtcggtccg
ggccggggctcgggggcggggtcgctggtggcctatgccctcaagatcaccgatctggat
ccgctggaatttgacctgctgttcgaacgtttcctgaaccccgagcgggtctccatgccc
gacttcgacgtcgacttctgcatggacaggcgcgacgaggtgatcgatcacgtctccgag
atgtacggccgggaggcggtgtcccagatcatcaccttcggcagcatggcggccaaggcg
gtggtgcgggacgtcggccgtgtgctgggccacgcctacggttttgtggatcgcatctcc
aagctgatcccgccggatccgggcatgaccctcgccaaggcgttcgaagccgagcccaag
ttgccggagctctatgagcaggacgaggaggtcaaggacctcatcgacatggcgcgccgc
ctcgaaggggtggtgcgcaacgccggcaagcacgccggtggcgtggtgatcgcacctacc
aagatcaccgacttcgcgccgctctattgcgacgacgaggggcatcacccggtcacccag
ttcgacaagaacgacgtggagtacgcgggcctggtgaagttcgacttcctgggtctgcgc
acgctcaccatcatcgactgggcccttggcatgataaacccgcgccttgccaaagagggc
aagccgccggtggacatcgccgccatccccatcgacgacaagaagtcgttcgccctcttg
cagcgtttcgagaccacggcggtgttccagctcgaatcccgcggcatgaaggaccttatc
aagcggctgcagcccgactgcttcgaagacatgatcgcgctggtggccctgttccgtccg
ggcccgctccagtcgggcatggtggacaacttcatcgagcgcaagcacggcaaggaggcc
atctcctacccggacgagaagtggcagcacgaaagcctcaaacccatactcgagcccacc
tacggcatcatcctctaccaggagcaggtgatgcagatcgcccagaccctggcggggtat
accctgggtggcgcggacatgctgcgtcgggccatgggcaagaaaaaacccgaagagatg
gccaagcagcgggcgggcttcgaggagggggctgtcaagaacggcgtcgacggcgaactg
gcgatgaagatcttcgatctggtggagaagtttgcgggctacggcttcaacaagtcccac
tccgctgcctatgcgctggtctcctaccagaccctctggctcaagacccatttcccggcg
gagttcatggcggcggtgatgaccgcggacatggacaacaccgacaagatagtgaccctg
gtggacgagtgtcagcgcatggggctgaccgtgatcccgccggacgtcaacaccggtcgc
taccgcttcagcgtcaatgaggacggccacatcgtctacggcatcggcgcggtgaaggga
gtaggggaagggcccatcgaggcgatcctggacgcgcgggatcgggacggtccgttccgc
gacctgttcgatttctgcaaccgggtcgacatcaagaagctcaacaagcgggtgatggag
aagctcatcctctccggcgccatggacaggctcggcccccaccgcgccgccctgatggcg
accctggaggaggcgatgcgcgccgccgagcagcacgccaaggcccaggcggtggggcag
gtcgacatgttcggtgtgctcacggaggagatcgacgacgtcaagaaggcgttcgccaac
gtgccgcactggcccgacaaggtgtggctggaaggggagcgggagaccctcgggctctac
ctcaccggtcaccccatcaaccagtacagcagcgagctgcggcgctacacctcgggccga
ctgtgcgatctgcatcccacctcccgggatacggtgaccacggcggcggggttggtgatc
gcggcgcgcagcatggtgaccaagcgcggcaacaagatggggatcttcaccctggacgac
agatccggccgtctggatgtgacccttttcagtgaagcgctggaaaaatacgaagaattg
atgcaaaaagaccgtattttagtggtttctggacaggtcagctttgatgacttctccggt
ggccttaaaatgtcggcccgcgagttgctggatatcaacgatgcgagggagcgttttgcc
agggcaatccgcatctccctcgatgaacaacgcattgacgagcgctttttcccgcgtttg
tgcgagattttggagcccgcccgtgccggagtctgtccggttcaggtaaactatcgtcgc
cccggttcccgggtgcgattgacgctcggtaccgagtggcgggtgacgcccaccgatcaa
ctgatagatgacttgcgagtcctgcttggacgagagcgggttgaattggtttttgattag
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