Aeromonas caviae: VI35_17455
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Entry
VI35_17455 CDS
T05190
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acav
Aeromonas caviae
Pathway
acav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VI35_17455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acav03019
]
VI35_17455
Enzymes [BR:
acav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VI35_17455
Messenger RNA biogenesis [BR:
acav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VI35_17455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATP91646
LinkDB
All DBs
Position
complement(3784764..3785984)
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AA seq
406 aa
AA seq
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MTFDELALAPALLPLLPAALEKPTPIQQLAIPAALSGRDLLALARTGSGKTLAFGLPLLQ
RLDAASDRVQGLVLVPTRELASQVSAALQEIADGLGVRLLTLCGGVAQEWQERELALGPQ
LLVATPGRLRDLLAQQTLGLGALRMLVLDEADRLLEMGFWPDIQWLMKAMPEARQQMLFS
ATLPVELESLASGLLQDPVRIEAEPLNSLVNDIEERLYLVNRSSKVPALIALLEAGEWPQ
VLVFISARDDADGVAKKLARAGMTVAALHGNKDQAAREQALADFKEGRVRVLVATDLMAR
GIHVEALPVVINLDLPDHAPVYVHRIGRTARAGQSGLAISLTCHGDGEALEGIRALTGRP
LPLAALAGFPVTDKPASGESKRAPRDKQANRRTQGKRSIKQFKGKS
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgacgaactcgcccttgcccccgccctgttgcccctgctgcccgccgcgctg
gaaaaaccgacccccattcagcagctagccattcctgctgccttgtcaggacgggatctg
cttgccctggccaggaccggcagtggcaagaccctggcattcggcctgccgctgctgcag
aggctggacgcagccagcgaccgggtacagggattggtactggtccccacccgggagctg
gcaagccaggtgagcgccgccctgcaggagattgccgacgggttgggggtgcgtctcctg
accctgtgtggcggggtggcccaggagtggcaggagcgggaactggctctcggcccccaa
ctgctggtggcgacccccggacggttgcgagacttgctggcccagcagacgctggggctg
ggtgccctgcgcatgctggtgctggatgaagcggatcgcctgctggagatggggttctgg
cccgatatccagtggctgatgaaggcaatgccggaggcgcggcagcagatgctcttctcc
gccaccttgccggtcgagctggagagcctggcctcgggcctgctgcaggatccggtgcgc
atcgaggccgagccgctcaacagcctggtgaacgacatcgaggagcggctctatctggtc
aacaggagcagcaaggtgcctgcgctgatcgccctgctggaggccggagagtggccccag
gtgctggtcttcatcagtgccagggacgacgcggacggggtggccaagaaactcgccagg
gctggcatgacggtggcggccctgcacggaaacaaggatcaggccgcgcgggagcaggcg
ctggcggatttcaaggagggcagggtgcgggtgctggtggccacggacctgatggcgcgc
ggcatccacgtggaggcattgcccgtggtgatcaatctggatctgccggaccatgcgccc
gtctacgtgcatcgtatcggtcgtaccgcccgtgccggacagagcggtctggccatctcc
cttacctgccacggggatggggaggcgctcgaggggatccgggccctgaccggtcggccc
ctgcccctggcggcgctggcaggtttcccggtgaccgacaaacccgccagcggggagagc
aaacgggcgccaagagacaagcaggcgaaccgtcgcacccagggcaagcgcagcatcaag
cagttcaagggcaaatcctga
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