Aeromonas caviae: VI35_19505
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Entry
VI35_19505 CDS
T05190
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
acav
Aeromonas caviae
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acav03019
]
VI35_19505
Messenger RNA biogenesis [BR:
acav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VI35_19505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
ARM_ECM29
Motif
Other DBs
NCBI-ProteinID:
ATP91963
LinkDB
All DBs
Position
complement(4203464..4205383)
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AA seq
639 aa
AA seq
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MKLTTQLVSFITLCVISAMAMVMLGGVFSFRQMGMELQQNRVDSLVEIIDKQLGVTDDQQ
ALARWLPSLLRASHVVELEIRQDKQRVYWFRDVQQQTDESLLIAYSEAIPNQAGMRAEFK
LDRPFKEFEYSMKAMFGISLGIFIVVFGLWYSIRWLRQQLRGAELLAERAQLILDGKLTK
LAHDPAEEWPVSASQALTHLLTELADARKERSRFDNFIRSNAFVDKTTGIGNRLFFDNRL
ESAIMEASVISGGVLLIELAGLEELDPELSGRPSQELLMEASATIAAFVRKHSGALQARY
AGQVFAVLLPNMSESEMVDGASQLLKSLQRLHWPEAVNADTAVYLGAVCYQAQDSLLKVQ
EEAELALKSARLQGHSGWFLFEKSLNEEASSKGTVRWRTLISRRIEEQGIDFYVQPVQQE
RDQVVLQQELLIRLHDEQGRELQAGVFMPMAEKAGLLLPLDRLVVARALRLLRQRPASSC
PISLSLCAQNLLTREFQRELFFELFQLPRSTNEGLILQLSESQVTRHYEALKRPLRAMRM
LGCRLAIDHAGQDVVSTQYIKEFEIHFLKLHPSLVREIHLRQVNQMAVRSLVGGCANTQT
RVIAVGVESGDEWKMLRHLGVHAGQGPWFADPEPLNLPD
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgaccactcaactcgtctcttttattacgctgtgcgtgatctcggccatggcc
atggtgatgctcggcggggtcttcagtttccgccagatgggaatggagctgcagcagaac
cgggtcgactccctggtggagatcatcgacaagcagctcggggtgaccgatgaccagcaa
gcccttgcccgctggctgccctccctgttgcgggcctcccatgtggtggagctggagatc
cgtcaggacaagcagcgggtctactggtttcgcgatgtgcaacagcagacggacgagagc
ctgctgatcgcctacagcgaggcgatccccaatcaggccgggatgcgggccgagttcaag
ctggacaggccgttcaaggagttcgagtactccatgaaggcgatgttcggcatctctctg
ggtatcttcatcgtggtgttcgggctctggtactccatccgctggctccgtcagcagttg
cgcggtgccgagctgctggcggagcgtgcccagctgatcctggatggcaagctgaccaag
ctggcccatgaccctgccgaggagtggcctgtttcggccagtcaggccctcacccatctg
ctgaccgagctggccgacgcccgcaaggagcgcagccgcttcgacaacttcatccgcagc
aacgccttcgtcgacaagacgacgggcatcggcaaccgcctcttcttcgacaaccggctg
gagagcgccatcatggaggcaagcgtgatcagcggcggtgtgctgctgatcgagctggct
ggtctggaggagctggatcccgagctgagcgggcgcccgagccaggaactcctgatggag
gcgagcgccaccatcgccgccttcgtgcgaaagcacagcggagccctgcaggcgcgctat
gccggtcaggtctttgccgtgctgctgccgaacatgtcagagagcgagatggtggacggc
gccagccagttgctcaagagtctgcagcggctgcactggcccgaagcggtcaatgccgac
accgccgtctatctcggtgcggtctgctatcaggcacaggattccctgctcaaggtgcag
gaagaggcggagctggcgctcaagagcgcgcgcctgcaaggacacagtggctggttcctg
ttcgagaaatccctcaacgaggaggcgagcagcaagggaacggtgcgctggcgcaccctg
atcagccgtcgcatcgaggagcagggcatcgacttctacgtccagcctgtgcagcaggag
cgggatcaggtggtgttgcagcaggagctgctcatccgccttcacgacgagcagggccgg
gagctgcaggcgggggtcttcatgcccatggcggagaaggccggtctgctgctgccgctg
gacagactggtggtggcccgagccttgcgactgctgcgccagcgaccggcatcgagctgc
cctatcagcctctctctgtgcgcccagaacctgctcacccgcgagttccagcgcgagctc
ttcttcgagctgttccagttgccgcgcagtaccaacgaggggttgatcctgcagttgtcg
gagtcccaggtgacccgccactacgaagccctcaagcggccgcttcgggcgatgcgcatg
ctggggtgcaggctggccatcgatcatgcgggccaggacgtggtgagcacccagtacatc
aaggagttcgagatccacttcctcaagctgcaccccagcctggtgcgggagatccacctg
cgccaggtcaaccagatggcggtacgcagtctggtggggggctgtgccaatacccagacc
cgggtcatcgcggtgggggtggagagtggcgacgagtggaagatgttgcgacacctgggc
gtgcatgccggtcaaggtccctggtttgccgaccccgagcccctcaacctgcctgactag
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