Aeromonas caviae: VI35_20300
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Entry
VI35_20300 CDS
T05190
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
acav
Aeromonas caviae
Pathway
acav03420
Nucleotide excision repair
acav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VI35_20300
03430 Mismatch repair
VI35_20300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acav03400
]
VI35_20300
Enzymes [BR:
acav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VI35_20300
DNA repair and recombination proteins [BR:
acav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VI35_20300
MMR (mismatch excision repair)
Other MMR factors
VI35_20300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ATP92092
LinkDB
All DBs
Position
complement(4354898..4357069)
Genome browser
AA seq
723 aa
AA seq
DB search
MDVSTLLDGLNDKQRDAVAAPRCNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAV
TFTNKAAAEMRGRVEKVIGDGVRGMWIGTFHGIAHRLLRAHHLDAGLPHDFQILDSDDQY
RLIRRVLKALNLDEKHWAPRAVMGYINGKKDEGLRPGDIDLYGDPVTRTYQQIYKTYQET
CDRSGLVDFAELLLRAHELWLNKPHILEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGDT
GKVMIVGDDDQSIYGWRGAKIENIQRFLTDYQGAETIRLEQNYRSTANILKAANSVIANN
SERLGKELWTEGAEGEPISLYAAFNEVDEARFVVGRLKDWKEKGGLLADCAILYRSNAQS
RVLEEALMQDAMPYRIYGGLRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGD
RTLEILRNNARDQGQNLWQSAKTLLGDKVLTGRAGNAVRGFVDLIDALEEQVSLLPLHQQ
ADIAIQNSGLKAMYLAEKGEKSQARVENLDELVTACRQYQRPDELEDMSDLSAFLAHAAL
ESGENQADEYADAVQLMTLHSAKGLEFPLVLLVGVEEGMFPSQQSTEESGRLEEERRLCY
VGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIRLRTQVSRPTQYGRFS
QNEVQQSFDASGIKLGQRVLHPKFGEGIVLNFEGVGQQSRVQIQFDDVGAKWLVTAYARL
ETL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcaaccctgctcgacgggctcaatgacaagcaaagagacgcggtggcggcc
ccccgttgcaacctgctggtgctggccggtgccggttcgggcaagacccgggtgctggtg
caccgtatcgcctggctgatgcaggtggaacgctgttcacccttctccatcatcgcggtg
acctttaccaacaaggcggcggccgagatgcgcggccgggtcgagaaagtgatcggcgac
ggcgtgcgcggcatgtggatcggcaccttccacggcatcgcccaccgattgctgcgggcc
catcatctggatgcgggcctgccccatgatttccagatcctcgactccgacgaccagtac
cgcctcattcgccgggtgctcaaggcgctcaacctggacgagaagcactgggcgccgcgc
gccgtgatgggctacatcaacggcaagaaggacgaggggctgcgccccggcgacatcgac
ctttacggcgaccccgtcacccgcacctatcagcagatctacaagacctatcaggagact
tgcgatcgctccgggctggtggacttcgcagaactcctgctgcgcgcccacgagctgtgg
ctcaacaagccccacatcctcgagcactaccgggatcgcttccagaacatcctggtggac
gagttccaggacaccaacggcatccagtacgcctggctgcggatgctggccggcgacacc
ggcaaggtgatgatcgttggtgacgatgaccagtccatctacggctggcgcggcgccaag
attgagaacatccagcgcttcctgaccgactatcagggcgccgagaccatccgcctagag
cagaactaccgctccaccgccaacatcctcaaagccgccaacagcgtcatcgccaacaac
tcggagcgccttggcaaggagctgtggaccgaaggggccgagggggagccgatttcgctc
tacgccgccttcaacgaggtggacgaagcccgctttgtggttggccgcctcaaggactgg
aaagagaagggcggtttgctcgccgactgcgccatcctctatcgctccaacgcccagtcg
cgggtgctggaagaggcgctgatgcaggacgccatgccgtaccggatctacggcggcctg
cgcttcttcgagcgccaggaaatcaaggacgccatggcctacctgcggcttatcaacaac
cgtggcgacgacgccagcttcgagcgggtggtcaacaccccgacccggggcatcggcgat
cgcaccctggagatcttgcgtaacaacgctcgcgatcagggccagaacctgtggcagtcc
gccaagacactgctgggcgacaaggtgctgaccggtcgcgccggcaacgcggtacgcggc
ttcgtcgatctcatcgacgcgctggaggaacaggtctccctgctgcccctgcaccagcag
gcggatatcgccatccagaactccggcctcaaagcgatgtatctggcggaaaaaggcgag
aaatcccaggcgcgggtagagaacctggacgaactggtcaccgcctgccgccagtaccag
cgcccggacgagctggaggacatgagcgatctctccgccttcctcgcccacgcggcgctg
gagtccggcgagaatcaggccgacgaatatgccgacgcggtgcagctgatgacgctgcac
agcgccaaggggctggagttcccgctggtactgctggtcggcgtggaagaaggcatgttc
cccagccagcaatccaccgaggagtcgggccggctggaagaggagcggcgcctctgttac
gtcggcatgacccgcgccatggagaagctctacatctgttatgcggagagccgccgcatc
tacggccgcgagatgttccacaagccgagccgctttatccgcgagatgcccgccgagtgt
ctggaagagatccggctgcgcactcaggtcagccgccccacccagtacggccgctttagc
cagaacgaggttcagcagagcttcgacgccagcggcatcaagcttggccagcgggtgctc
catccgaaattcggggaaggcatagtgctgaacttcgaaggggtcggccagcagagccgg
gtgcagatccagttcgacgacgtcggcgccaagtggctggtgacggcctatgccagattg
gaaacactttga
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