Acinetobacter pittii: BDGL_002504
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Entry
BDGL_002504 CDS
T01684
Symbol
rnr
Name
(RefSeq) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
acc
Acinetobacter pittii
Pathway
acc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDGL_002504 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acc03019
]
BDGL_002504 (rnr)
03016 Transfer RNA biogenesis [BR:
acc03016
]
BDGL_002504 (rnr)
Enzymes [BR:
acc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BDGL_002504 (rnr)
Messenger RNA biogenesis [BR:
acc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BDGL_002504 (rnr)
Transfer RNA biogenesis [BR:
acc03016
]
Prokaryotic type
tRNA degradation factors
BDGL_002504 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Motif
Other DBs
NCBI-GeneID:
11637045
NCBI-ProteinID:
YP_004996772
UniProt:
F0KPZ5
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All DBs
Position
2704160..2706592
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AA seq
810 aa
AA seq
DB search
MKPNDMTKNWADPEAKAEAERYDNPIPSRTLILDTLEQLQTPQSHAELVDHFNIHDQKSI
EALSHRLSAMVRDGQIMKDGFKFQLVADQPTYEATVYINSKGLGTAHIDGQSDLLLPERE
LRLVFNGDRVRVRQTSVDRKGKPWGFITEVLQHRVKQLIGKLSVHDGEYFIQPNNPNQHQ
PIPLEKELVTHAEANVGDMLRVAIDSYPTREEFATAHIIQSMADKADTEIIIPQTILEFG
LPYEFPDEVIKEAESFKEPSAQDREGRIDLRDLALVTIDGEDARDFDDAVYAEKRPGGGY
RVVVAIADVSHYVRLDSALNEEAEERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCM
VCDLKLSRTGRVTGYDFYPSVMHSKARLTYTQVAQYFDGATDAIPKDRDVHKSLNTLFQL
YQILKNLRADRHAMEFETIETYMTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEY
ALEHDVPMLYRVHEAPEFSRIQKVKDFVKLLGLPFPDQPTQADYQRVIEATKDRIDAPSI
HAVLLRSMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLKQKPYPLSG
AALDDAGEHFSQTERRADEASRSVTTWLKCHYMQQHLGDEFIGIVSAVTEFGLFVTLKDL
YVDGMIHISQLGDDFFIYDQASQNLVGQNRGQVFGLGDEVKIQVAGVNLEERKIDFQLIK
QVTHAGRVVRSRAPRTTKTTTQATEEVFSKPTVSSDGERPVHKKKEKSKPSSYTKKSGKK
TSAKAETKSEKVKKKSKPKKKKSNAKSKAE
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaccaaacgacatgacaaaaaactgggctgaccccgaagcgaaagctgaagctgaa
cgttatgacaatcctattccaagccgtactcttattttagatacattggaacaattgcag
acaccgcaatctcatgcagaacttgtcgatcattttaatattcatgaccaaaaaagtatt
gaagcactcagtcatcgcttaagtgctatggttcgtgatggtcaaatcatgaaagacggg
tttaaatttcagttggtggcagatcaaccgacctatgaagcaactgtttatatcaatagt
aaaggtttaggcacagcgcatatcgatggtcaaagtgaccttttacttcctgaacgtgaa
ttacgtttagtctttaacggtgaccgagttagagtgcgacagacttcagttgatcgtaaa
ggcaaaccttggggatttatcacagaagttttacaacatcgtgttaaacaattaattggt
aaattgtcggttcacgatggcgaatattttattcagcccaacaatccaaatcagcaccaa
cctattcctttagaaaaagaactggtaacgcatgctgaagcaaatgttggcgatatgcta
cgtgtcgcaatagatagttatccgactcgtgaagaatttgcgacggcgcatattattcag
tctatggccgacaaagctgatacagaaattattattccgcagactattcttgagtttggc
ttaccttacgaattcccagatgaagttataaaagaagctgaaagctttaaagaaccatct
gctcaagaccgtgaaggccgcattgatttacgagatttagcattagttacgatcgatggt
gaagatgctcgagattttgatgatgcggtttatgcagaaaaacgtccaggtggcggttat
cgtgtagttgtcgcaattgctgatgttagccattatgtacgcttagactcagccctcaat
gaagaagctgaggaacgtggtacttcggtatacttcccgcatttcgtattaccgatgcta
ccagaggcattgtcaaatggcttatgctctctaaaccctcatgtagaccgtttatgtatg
gtctgtgacttgaaactctctcgtacaggccgtgtaactggttacgatttttatccatca
gtgatgcattcaaaagcgcgtttgacctatacacaggtagcacaatattttgacggcgca
acagatgcgattccaaaagatcgtgatgttcataaatctttaaatacgcttttccagctt
tatcagattttgaaaaatttacgtgctgatcgtcatgcaatggaatttgaaaccattgaa
acctacatgacttttgatgagctaggcgggattaaagaaattttgccacgtacacgtaat
gaagcacataagctcattgaagagtgcatgttacttgctaacgttgctgcggctgaatat
gcattagaacatgatgttccaatgttatatcgcgtgcacgaagctccagagttttcacgt
attcagaaagtaaaagactttgtgaaattactgggtctacccttccctgaccaaccaact
caagcagactatcaaagagtaattgaagcaactaaagatcgtattgatgctcctagtatt
catgccgtcttattacgctcaatgatgcaagcttattatggcgcaaaaaatgcagggcac
tatggtttggcttatgaagcttatacgcatttcacttcgccaattcgtcgttacccagac
ctattgttacaccgtgccattaaagcacacttgaaacaaaagccttaccctctctctggt
gctgcactagatgatgcaggtgaacatttctctcaaacagagcgccgtgctgatgaagct
tctcgtagcgtaacaacttggttgaaatgtcactacatgcagcagcatctaggtgatgaa
ttcattggtattgtaagtgcggtgaccgaattcggtttattcgtgacactgaaagattta
tatgtcgatggtatgattcatattagccaactcggcgatgacttctttatttatgaccaa
gcgagtcaaaatctagtaggtcaaaatcgtggtcaagtctttggtttaggcgatgaagtt
aaaattcaggttgctggtgtcaatctggaagaacgtaaaattgactttcaactcattaag
caagttacccatgcaggccgagtagttcgtagccgtgcgccgcgtacgactaaaactact
acgcaggcgactgaagaagttttcagtaaaccaactgtcagtagtgatggtgagcgacct
gttcacaaaaagaaagaaaaaagtaagccaagttcttacaccaaaaaatctggtaagaaa
acctcagcaaaagccgagactaaatcagaaaaggtgaagaaaaaatctaagcctaaaaag
aaaaagtcgaatgcaaaatcaaaggctgaatag
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