Acidothermus cellulolyticus: Acel_1913
Help
Entry
Acel_1913 CDS
T00426
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ace
Acidothermus cellulolyticus
Pathway
ace03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ace00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Acel_1913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ace03400
]
Acel_1913
Enzymes [BR:
ace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acel_1913
DNA repair and recombination proteins [BR:
ace03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Acel_1913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABK53685
UniProt:
A0LW75
LinkDB
All DBs
Position
complement(2160857..2164435)
Genome browser
AA seq
1192 aa
AA seq
DB search
MVPGVCLTGFGMDLRGLITALLGDDGFARVRDAARKGIANVEVGVPRPLRAFITALIAAD
APYGAGRPVLAVTATEREATELATALEPLLPAGAVAEYPAWETLPHERLSPRADTVGRRV
AVRRLLREQGGTLRVITTPVRALLQPQVAGLGDLEPVELRPGDEADLNDVVARLVAIGYH
RVDLVERRGEIAVRGGILDIFPPTAEHPLRVEFFGDRIEEIRPFRAGDQRSFGESADRVW
ATACRELLLTDRVVTRAAELAQRYPQLADILGKVAHGVVVEGMEALAPLLADEMNLLLDE
VPSQTVVVVCDPERVRARAADVVRTGEEFLHAAWAGAAAGGNAPIDLAAAALRPFADIRR
HAADLGLAWWSISPLQTADAAEFRDDTGEVVIVPDAHEAPAYRGDTQALVADVKGWLGDG
LRVAVLTAGHGSAQRIVEVLAGEDVPARWTETIPQPPDHDLVSVSCGGLDAGFIARGAGL
VVLTETEIFGTRAAARNLGRLPSRRRKSIDPLELRPGDFVVHEQHGVGRFVGMATREIGG
ATREYLVIEYAPSRRGQPGDRLWVPTDSLDQVTRYVGGEAPTLDRIGGADWARRKGRARK
AVREIAAELIQLYSARMASPGHAFGPDTPWQRELEEAFPYVETPDQLRTIEEVKADMERP
VPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLCPTTLLVQQHYATFSERFANFPVV
VKPVSRFNTFKEQEEILAGLAAGTVDVVIGTHRLLSDGVVFKDLGLVIVDEEQRFGVEHK
ERLKRLRTNVDVLTMSATPIPRTLEMAITGIREMSVIQTPPEERHPVLTFVGPFDEHQIA
AAIRRELLREGQVFYVHNRVETIEQAAARVRELVPEARVAVAHGQMNEDALEQVMIGFWE
RAFDVLVCTTIIESGLDIPNANTLIVERADLLGLGQLYQLRGRVGRGRERGYAYFCYPAD
RPLTETAHDRLATIAQHSDLGSGMSIAMKDLEIRGAGNLLGGEQSGHIAEVGFDLYMRLV
GEAVADFRGDQSREPVDVRLDLPVEAHIPHDYIDAERLRLATYQALAEATSDPDVDAIAE
ELLDRYGPLPEPVRNLLEVAKLRGTLRAHGVTEVALQGTYIRLAPVQLRDSQKVRLQRLY
PKSIVKDAVQAILVPRPRAQDGRGDLLRDAPLVLWVRDLVQTVLDAPISAAR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggtcccgggtgtttgtctgaccggattcggcatggatctacgtggcttgatcacggcc
ctgctgggcgatgacggcttcgcgcgtgtccgcgacgcagcccgcaagggcattgcgaac
gtcgaggtcggcgttccgcgtccactccgcgcgttcatcacggcgctgatcgcggctgac
gcaccgtacggcgctggacgtcccgtgcttgcggtcacggcgaccgagcgggaagccacc
gagcttgccaccgcgctggaacccctgctccccgccggcgcggtcgccgaatatcccgcg
tgggagaccctgccgcacgagcggttgtcgccgcgtgcggacaccgtcggacgccgggtc
gccgtccggcgcctccttcgggagcaggggggcacgcttcgggtcattactacgccggtg
cgcgcgctgctccagccgcaggtcgccggattgggagatctcgagccggtcgagctgcgg
cccggtgatgaggccgatctcaatgatgtcgtggcccggctggtggcgatcggctaccac
cgcgtcgatctcgtcgaacgacgaggggagatcgccgtccgcggcggcatcctcgacatt
tttccgcccaccgccgagcatccgctccgggtggaattcttcggtgaccgtattgaagaa
attcgccctttccgcgccggcgaccagcggagtttcggtgagtcggcggatcgggtgtgg
gcgacggcatgccgggaattgctcctgaccgaccgtgtcgtcacccgcgcggccgagttg
gcgcagcggtatccgcagctcgctgacattctcggcaaggtcgcgcacggtgtcgtcgtc
gaagggatggaagcactcgccccgctgctcgcggacgagatgaacctcctgcttgacgaa
gtcccgtcccagacggtggtcgtggtctgcgatcccgagcgggtgcgcgcccgggccgcg
gacgtcgtccggaccggcgaggagtttctgcacgccgcctgggccggcgccgcggcgggt
gggaacgcaccgatcgaccttgccgcggcggcgttacggccgttcgccgatattcgccgc
cacgccgcagatctcggcctggcctggtggtccatctcgccgctgcagaccgcggacgcc
gcggaatttcgggacgacaccggtgaggtcgtcatcgtcccggacgcgcacgaagcgccg
gcctaccgcggggacacgcaggcactcgtcgccgatgtcaagggctggctgggtgacggg
ctgagggtcgccgtcctcaccgccgggcacggttccgcccagcggatcgtcgaagtgctg
gccggtgaggacgttccggcccgatggacggagaccatcccgcagccgcccgaccacgac
ctcgtttcggtgagctgcggagggctggacgccgggttcatcgcgcgcggtgcggggctc
gtcgtcctcaccgagacggagattttcggcacccgtgccgcggcccgcaacctcggcagg
ctgccaagccggcgacggaaatccatcgacccgctggaacttcggccgggcgatttcgtc
gtccacgagcagcatggtgtcggcaggttcgtcggcatggcgacccgggaaatcggcggt
gcgacccgggagtacctcgtcatcgagtacgccccgtcccggcgcggtcaaccgggggac
cggctctgggttccgactgactccctcgaccaggtcactcggtacgtcggcggagaggca
ccgacgctggaccgcatcggcggcgcggactgggcgcggcgcaaaggccgggcgcgcaaa
gccgtccgcgaaatcgcagccgaattgattcagctgtacagcgcgcggatggcgtcgccc
ggccatgcgttcggaccggacacgccctggcagcgggaactcgaagaggcttttccgtac
gtggaaacgccggatcagctgcgcaccatcgaggaggtcaaggccgacatggagcggccg
gtcccgatggatcggctgatctgcggcgacgtcggatacggcaagaccgaaatcgcggtg
cgcgcggcgttcaaggcggttcaggacggcaagcaggtcgccgtgctctgcccgaccacc
ctcctcgtgcagcagcattacgcgacgttcagtgaacggttcgcgaattttccggttgtc
gtcaagccggtgagccgtttcaacaccttcaaggagcaggaggagattctcgccggcttg
gccgcaggcacggtggacgtcgtcatcggtacgcaccgtctgttgagcgacggcgtcgtc
ttcaaggatctcggcctggtcatcgttgacgaagagcagcgcttcggcgtcgagcacaag
gagcggttgaagcggctgcgcacgaacgtcgacgtgctgacgatgtccgcgacccccatt
ccgcggaccctggagatggccatcaccggaatccgcgaaatgtcggtcattcaaacaccg
cccgaagagcggcatcccgtcctgacattcgtcggacccttcgacgaacaccagatcgct
gcagcgattcggcgggaattgctccgcgagggccaggtgttctacgtgcacaatcgggtg
gaaaccatcgaacaggccgcggcccgggtccgggaactggtcccggaagcccgcgtcgcc
gtcgcccacggccagatgaacgaagatgcgctcgagcaggtgatgatcggattctgggag
cgggcgttcgacgttctggtctgcaccaccatcatcgagtccggcctggacattccgaat
gcgaatacgctcatcgtcgaacgggctgacctccttggtctgggccagctctatcaactg
cgcggccgggtcgggcgcggccgggagcgcggttacgcgtatttctgctatcccgccgac
cgtccgctcaccgagacggcccacgaccgacttgccaccatcgcccagcattccgatttg
ggttctggaatgtccattgcgatgaaggacctggaaatccgcggcgccggcaacctcctc
ggcggcgaacaatccggccatatcgccgaggtcggcttcgatttgtacatgcgattggtt
ggtgaagcagtggccgatttccgcggcgaccagagccgcgaacccgtcgacgtccggctc
gatctgccggtggaggcgcacattccgcacgattacatcgacgccgagcgactccggctc
gcgacgtatcaggcgctggcggaagcgacgtccgatcccgacgtcgacgcgatcgcggag
gagctcctcgaccggtacggtccgttgccggagccggtgcggaacctgctcgaggtggcc
aagctccgcgggacattgcgggcgcatggggtcaccgaagttgcgttgcagggcacgtat
attcgtctggcgccggtgcaattgcgggattcgcagaaggtgcggctgcagcggctgtat
ccgaaatcgatcgtcaaggacgccgtccaggcgattctcgttccccgcccgcgggcgcag
gacggacgcggtgacctgctccgtgacgcaccgctcgtgctctgggtgcgcgacctggtc
cagacagtgctcgatgcgccgatttccgcggcccgatag
DBGET
integrated database retrieval system
