Anaerocolumna cellulosilytica: acsn021_01980
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Entry
acsn021_01980 CDS
T06764
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acel
Anaerocolumna cellulosilytica
Pathway
acel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
acsn021_01980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acel03400
]
acsn021_01980 (mfd)
Enzymes [BR:
acel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
acsn021_01980 (mfd)
DNA repair and recombination proteins [BR:
acel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
acsn021_01980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
BCJ92629
UniProt:
A0A6S6QU65
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All DBs
Position
232552..236100
Genome browser
AA seq
1182 aa
AA seq
DB search
MKTFTTPLKELREYNDIKDNLKLKNTPIQVTGCIDSQKCHLISGLSEDYPWKLIITYNDI
KAKEIYEDYKLYDKNVFIYPAKDIIFYSADIHGNAIVRDRLKILKRLLQKEPVTVITTLD
GGMDRILPLEYLKKRIILLEEGGSLDLTKLQAELIHLGYERQGQVEGPGEFAVRGGILDI
FPPTEECPYRVELWGDEVDSIRSFDIDSQRSIERISSISIYPAAEMILTEDRLLMGLKKI
DEEKKEHVKKLREQMKTEEAARIHDIIEEFRENIESFQGSVGIDSFIRYFYDNTVSFFDY
FKEESIVFLDEPGRIGEKGEAVENEFREGMIGRLEKGYILPGQSDAIYGYKELLINLSHK
TLLLLSTMDQKTAYFNVKGKWDFTVRSVNPYNNNFDILVQDLIKWKKSGYRVLLLSGSRT
RAKRLSEDLREHELNAFYSEDMDRIIQKGEIMVAGGNLHRGFEYPLINLVIISESDIFGA
EKKKRKKRKEYDGKKIQSFTDLNIGDYVVHENHGLGIYRGIEKIEVDKVTKDYMKIEYGG
GGVLYILATGLDVIQKYAGADAKKPKLNKLNSPEWKNTKTRVKGAVKEIAKELVALYATR
QEKSGYQFGPDTVWQNEFEEMFPYEETDDQLRAIEDTKRDMESTRIMDRLVCGDVGYGKT
EIAIRAAFKAVSDGKQVVFLVPTTILAQQHYNTFVQRMMDFPVSIDMLSRFKTPAQQKAV
IERAKKGSLDILIGTHRVLSKDIKFKNLGLLMVDEEQRFGVTHKEKIKTIKENIDVLTLT
ATPIPRTLHMSLIGIRDMSVLTEPPVDRIPIQTYVLEHNEEIIREAIHRELARDGQVYYV
YNRVNGIDEIASKIARLVPEANVSFAHGQMSERELERIMFDFINGEIDVLVSTTIIETGL
DISNVNTMIIDDADRLGLSQLYQLRGRVGRSNRTAYAFLMYKRDKMLKEIAEKRLQAIKE
FTELGSGFKIAMRDLEIRGAGNLLGAQQSGHMEAVGYDLYCKMLNDAVRSMRGETNEEET
FDTTVDMDIDAFIPATYIKSEFQKLDVYKRIAEIENEEELLDMQEELLDRFGDMPASVNN
LLNIAFIKSICHSACVTNLVYRNDDIKLVMYNKAKLKVESIPEFVGKYQPALKLVPEASP
YFIYSIKKGPKLGKNGKLDTITLFEFVKNLLNDLKLLLEDNK
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacctttaccacccctctgaaagagttgagggagtataatgacataaaggacaac
ttaaagctgaaaaatacccctattcaggtaaccgggtgcattgattcgcaaaaatgtcat
ctaatcagcggtttaagtgaagactatccctggaagttaatcataacttataatgacata
aaagcgaaggaaatctatgaagattataagctatatgataagaatgtttttatctatcct
gcaaaggacattatattttacagtgctgatattcatggcaatgccattgtcagagatcgt
ctgaaaatactaaagcgtttacttcaaaaagaaccggttacagtaattactaccctagac
ggaggaatggatcgtattcttcctttagaatatctaaaaaagcggataatactgcttgaa
gaaggcggaagtcttgatttaaccaagttacaggcagaacttatacacctaggatatgag
cggcagggtcaggtagaagggcctggagagttcgcagtaagagggggtatcttagatatt
tttccgccgacagaggaatgtccgtaccgagttgagctttggggagatgaagtagattcc
atccgttcctttgacatagacagtcagaggtcaattgaaaggatatcttctataagtatt
tacccggcagcagaaatgatattaacggaagaccggttgttgatgggtcttaaaaagatt
gacgaggaaaagaaggagcacgttaagaaattaagggaacaaatgaaaaccgaagaagca
gcaagaattcatgatattattgaagaattcagggaaaatattgaaagcttccaaggttca
gttggtatagatagttttatcaggtatttctatgataataccgtatccttttttgactat
tttaaagaggaatccattgtgtttttggatgagccgggtagaatcggggaaaaaggagaa
gcagttgaaaacgaatttcgtgaaggcatgattggcaggctcgagaaaggttatatactt
cccgggcaaagtgatgctatttatggttataaggaattattaattaacttaagtcataaa
accttattgctgttaagtactatggatcaaaagacagcatactttaacgtaaaaggaaag
tgggattttacagtacgctctgtaaatccctataataacaattttgatatattggtgcag
gatttaataaagtggaaaaaaagcggttacagggtacttttattatctggctccagaact
cgtgcgaaacgtctgagcgaggatttaagggagcatgaactgaatgccttttacagtgag
gatatggatagaatcatccaaaagggagagattatggttgcgggcggtaatctccaccga
ggatttgaatatcctctgataaatcttgttattatatcggagagtgatatctttggtgct
gaaaagaaaaaacgtaagaagcgaaaggaatatgacgggaaaaagatacaaagttttaca
gacttaaatattggggattatgtagtccatgaaaaccatggtcttggaatctatcgtgga
attgaaaagatagaggtagacaaggtaacaaaggattatatgaaaattgaatacggcgga
ggaggcgtgttgtatattcttgcaacaggccttgatgttatacaaaaatatgccggggcg
gatgccaaaaagcccaagctaaacaaattaaattcaccggagtggaagaatactaagacc
agggtaaaaggtgctgttaaagaaattgcaaaagagttggttgcactttatgctacaaga
caggaaaaaagcggttatcagtttggaccggatacggtgtggcagaatgaatttgaggag
atgtttccgtatgaagaaacagacgatcagttaagagccattgaagatacgaaacgggac
atggagagtaccagaattatggatcgcttagtatgtggggacgttgggtatggaaagaca
gaaattgccataagagcagcttttaaagcagtgtcggatgggaaacaggtagtatttcta
gtgccaactaccatcctggctcagcagcattataatacctttgtacaacgtatgatggat
ttccctgtaagcatagatatgctgtcccggtttaaaactcccgctcagcaaaaggcggtg
atagaacgggctaaaaagggaagcttagatatattaattggaacccaccgggtattatca
aaggatatcaaatttaaaaatttagggcttcttatggttgatgaagagcagcgttttgga
gttacccataaggaaaaaatcaagacaataaaagagaatattgatgtattgactcttact
gcaacacctattccaagaacccttcatatgagtttaatcggtatacgtgacatgagtgta
ttaacagagccacctgttgacagaatacctatacagacctatgtattagagcataatgaa
gaaattatcagagaagccattcatcgtgagctggcaagagacggacaggtatattatgtt
tataacagggtaaatggtattgatgaaattgcaagtaagatagccagactggtaccagag
gccaatgtttcctttgctcatggacagatgagtgagagggagctagagcggattatgttc
gactttattaacggggaaatcgatgtcttggtatccactactataattgagacaggactt
gatatttctaatgttaataccatgataattgatgatgcagatcgtttaggtttatcccag
ctctatcagctaagaggaagggttggaaggtcaaaccggactgcatatgcttttttaatg
tacaaacgggataaaatgttaaaggaaatcgcggaaaagaggcttcaggctattaaggaa
tttacagaacttggttccggttttaaaatagctatgcgtgatttggaaatccgtggtgct
ggaaaccttttaggagcacagcaaagcgggcatatggaagcggtcggctatgacttgtat
tgtaaaatgctaaatgatgcggtacgttctatgaggggagaaaccaatgaggaagaaacc
tttgatacgacggttgatatggatatagatgcctttataccggctacgtatataaaaagt
gaatttcagaagctcgatgtatataaacgaattgctgaaattgaaaatgaagaagaacta
ttagatatgcaagaagagctattagatcgtttcggggatatgccggcttcggttaataac
ctgcttaacattgcgtttatcaaatccatctgtcatagtgcctgtgtaacgaatctggta
taccggaacgatgatattaagctggtaatgtataacaaagcaaaattaaaagttgagagc
attcctgaattcgttggtaaatatcagcctgctttaaaattagtgccggaggcgagtcct
tactttatctattctataaaaaaaggacctaagttgggcaaaaacgggaagcttgatact
ataacactatttgaattcgttaaaaatttattaaatgatttaaaactattgctggaagac
aataaataa
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