Atta cephalotes (leaf cutting ant): 105618507
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Entry
105618507 CDS
T04923
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
acep
Atta cephalotes (leaf cutting ant)
Pathway
acep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105618507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acep03041
]
105618507
03009 Ribosome biogenesis [BR:
acep03009
]
105618507
Enzymes [BR:
acep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105618507
Spliceosome [BR:
acep03041
]
Complex A
U2 snRNP components
U2 related factors
105618507
Complex B
105618507
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105618507
Ribosome biogenesis [BR:
acep03009
]
Eukaryotic type
90S particles
Helicases
105618507
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
T2SSE
Flavi_DEAD
AAA_7
ABC_tran
AAA_30
AAA_16
AAA_25
TsaE
Motif
Other DBs
NCBI-GeneID:
105618507
NCBI-ProteinID:
XP_012055430
UniProt:
A0A158ND22
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYVKRKATDSTVANNTTTPGTTAAKSQVQFNPYTMLPYTPRYYELYKKRI
TLPVFEYRTDFMRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGSKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIPGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEPAPPTKTNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLELTQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaggattgaggtcgtggatccctatgtcaaaaggaaagccacggacagt
accgttgccaataatacaacaactccagggacaacggcagcaaaaagccaagtgcagttc
aatccatatactatgctgccatatacgccgagatattatgaactttacaagaaaagaata
actttacctgtatttgaatatcgtactgatttcatgagattgttgtcccagcatcaatgc
attgttcttgttggagagacaggttctggcaaaactacacagataccacagtggtgtgta
gagtattcaagaagtattggatccaaaggagtcgcttgtacacagcctagaagagtggct
gcaatgagcgttgctcaaagagtttcagaagaaatggatgttgccttaggtcaagaagta
ggatacagcatccgttttgaagattgtagttcaccaaggactgtgttaaagtacatgacc
gacggtatgttgcttcgggaagggatgtctgatcccatgttggatgcctatcaagtgata
ctgctagatgaagctcatgaaagaacgttagctactgacttgctgatgggtgttttgaaa
gaagtgatcaagcagagaccggacttaaaacttgtgattatgagtgctaccttggacgct
ggaaaatttcaacagtattttgacaatgctccacttatgaacgtacctggtagaacgcat
ccagtcgagatattttatacaccagagccagagagggattacttggaagcagcaataaga
actgttattcagatacagatgtgtgaagaaattcctggggatcttttgctatttttaact
ggtcaagaggaaattgaagaagcttgcaagagaataaaaagagaaatggacaacttggga
cctgaagttggtgaattaaagtgcataccattgtactcgacactgccgccgaatcttcaa
cagagaatatttgaacctgctccgcctaccaaaactaacggtgctatcggccgcaaagtt
gtcgtttcgaccaatatcgcagagacatcattgactatcgacggagttgtctttgtcata
gatcctggttttgccaaacaaaaagtatacaatcctaggattcgtgtcgaatctctttta
gtgtcacctattagtaaggcttcagcgcaacagagagccggtcgtgctggtagaacaagg
cctggaaagtgtttcagattatacacagaaaaagcgtataaaaacgagatgcaggataat
acctatcctgagattttgcgttctaatcttggaagtgtcgtattgcaattgaagaaactt
ggcatcgatgatttggtgcattttgactttatggatccacctgcgcccgaaactcttatg
agagctttggaacttttgaattatttagcagctctggatgatgatggaaacttgacagat
ctcggcgcagtaatggcggaatttcctttggatccccaattagcaaagatgcttatagct
tcttgcaatcataattgcagtaatgagatactcagcattactgctatgctctcagtccca
cagtgctttgtgaggccgaatgaatcgaaaaaagcagcagatgatgcaaaaatgaaattt
gcacacattgatggtgaccatctgacgctactgaatgtatatcattctttcaaacaacat
atggatgatgttcaatggtgttacgataattatgtaaattatcgatcgctgaagagcgga
gataatgtaagacaacagttaagtagaataatggatagatttgtattaaaacgcacttcg
acggactttaattcaaaagattattacattaacatcagaaaagctctcgttaatggtttc
ttcatgcaggtagcgcatttagagagaacaggacattacctgactatcaaagataaccag
gtagtgcaacttcatccgagcagttgtctcgatcacaaaccagaatgggttatttataat
gaatttgtgctcactactaaaaattatatcagaacagtcactgatattaaacctgattgg
ttactcatgatagcaccacaatattatgatctacaaaattttcctcaatgtgaagcaaaa
agacagctcgagctcactcaggcgaagttagattctaaacaatatcaggaaggcttctaa
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integrated database retrieval system
