Atta cephalotes (leaf cutting ant): 105623029
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Entry
105623029 CDS
T04923
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
acep
Atta cephalotes (leaf cutting ant)
Pathway
acep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105623029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acep03041
]
105623029
Enzymes [BR:
acep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105623029
Spliceosome [BR:
acep03041
]
Complex C
Other components
Step II factors
105623029
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
AAA_30
ResIII
AAA_16
AAA_24
T2SSE
ATPase_2
ABC_tran
ATPase
Sigma54_activ_2
PhoH
cobW
Sigma54_activat
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
105623029
NCBI-ProteinID:
XP_012059822
UniProt:
A0A158NQL4
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MSDDSSLYRLEGSIGNEGGGLVIRKKTSDHTFKKPSILGLDKLAERKRREQSQEPTSSKS
NKSEGKDRRYRSYEEETPTHTGGVNSEAQQRLESRLKRQRLSADDRNSKNSYKSRERDRD
RRRDRDRESRGRDSSIRQTPLRFRDEPQTPKFRTKDPTSKSNWDDDEDEEPKRSSWDHPT
PNLYTNRDSRDSVRSEFTPSYKYNSWNKDFKSSGTTPMIDGEEKEMWEEEQQRLDREWYA
LDDGENNAFANVSEEYTRKKEMELEARRQKRLSAQQRQINKDNELWERNRMLTSGVVSSL
DHDDDPDDEGEARVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSDMALVARKGSALV
KAYREQKERRRAQKKHWELAGTHIGNIMGVHDRRKDDKEHAGQETDFKAGQKYARHIGSG
EVTGEAKYKSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGSGKTTQLTQYLHEDGY
SRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCTSKDTVIKYMTDGILL
RESLREGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSA
FFGNAATFQIPGRTFPVEVLHAKNPVEDYVDAAVKQVLQIHLQPKSGDVLVFMPGQEDIE
VTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETSLTV
DGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRQGRAGRTGPGQCYRLYTRRQY
LDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILGALD
HTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGREEDS
DSAREKFQVPESDHLTYLNVYNQWKANGYSSSWCNDHFIHAKAMRKVREVRSQLEEILKQ
QKMDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGFTP
DYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKRRQAMQHLHEMEH
QMKEAEEEMKARAQEQLEREQASVRKKEILTPGIREPGTPAPYRNTPGRLGL
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgattcaagcttgtatagattagagggatctataggaaatgaagggggtggt
ctggtcatacgtaagaaaacatcggatcatactttcaagaaaccttctatattaggtctt
gacaagcttgcagaacgaaaaagaagagagcaatcgcaggagcctaccagctctaagtct
aacaaatccgaaggaaaggacagaagatatcgatcttatgaagaagaaactcctactcat
actggaggtgtcaattctgaagcgcaacaaagattagagtcaagactcaagcgtcagcga
ttaagtgcagatgatagaaactctaaaaattcatataaaagtcgcgagagagacagagac
aggcgaagggatcgagatagggaaagtcgaggcagagatagtagtataagacaaacgcct
cttagattcagggatgaaccccaaacgccgaaatttcggacgaaagatccgacttctaag
agcaattgggacgacgacgaggacgaagagccaaaacgatccagctgggatcatccgaca
ccgaatctgtacactaacagagatagtcgcgatagtgtcagaagcgaatttactccttcc
tataaatacaactcatggaacaaagattttaagagttccggtaccactccgatgatagac
ggagaggagaaggaaatgtgggaagaggaacagcaacgactagacagagaatggtatgca
ttagacgatggagagaataacgctttcgctaatgtgtccgaagaatatacgcggaagaag
gaaatggagttggaggccaggagacagaaacgcctttctgctcagcaaagacaaataaat
aaggacaatgaattgtgggagcgtaaccgtatgttaacgtctggagttgtgagctcgtta
gatcatgacgacgatcctgatgacgaaggagaggcaagagttcacttgctggttcataac
gtagtcccgccgtttttggatggacgtatcgtgttcacgaagcaaccggaaccggttgta
cctgtgcgtgatcccacttctgacatggctctggtagcaaggaaaggttcggcactagtc
aaagcataccgtgagcaaaaggaaaggcgtagagctcaaaaaaagcattgggaactggca
ggaacacacatcggtaatattatgggtgtacacgatcggcgtaaagacgataaagagcat
gcagggcaagaaacagattttaaagctgggcaaaaatatgcccgacacatagggtcgggc
gaagtaacgggggaagctaagtacaaatctatacagcatcaaaggaggagtcttcctgta
ttcgcagtacgtcaagaactgcttaatgttatcagggagaacagcgttgttgtaatagta
ggcgaaactggtagcggcaaaaccacgcaattaacgcagtatcttcacgaggatggttac
agtcgctacggtataattggttgtactcagccaagacgagtcgctgctatgtccgtcgcg
aaaagagtatccgacgagatggctactgctctaggcgacaaagttggatatgcaatacgt
ttcgaagattgtacatcgaaagatacggtcattaagtatatgaccgatggtattttactg
agagaaagtttgagagaaggagatctggatcgttacagcgtgattataatggacgaagct
cacgaacgatcactttccaccgacgtattgtttggtcttcttagagaggttgtcgctaga
cggcatgatctaaagttaatcgtcacttccgcaacaatggattgcagcaaattctccgct
ttcttcggtaacgcggcaacattccaaatacctggacgtacgttccccgtcgaagtactg
cacgcgaagaatccagtcgaagattacgtggacgcggctgtaaaacaagttttgcaaatt
catttgcagcccaaaagcggtgacgtattggtctttatgcccggtcaagaggacatcgaa
gtcacttgcgaagctctgaaagaacgcttagctgaaatcgaatcggctccgccactttct
atactgcccatttattcccaactgccatcggacttgcaggcaaagatctttcaacgatcc
gagggaggtctacgtaaatgtgtcgttgcgaccaatatagcggaaacgtcgctgacggtc
gatggaattgttttcgttgttgattcaggatactgtaaattaaaagtgtacaatcctcga
ataggtatggacgctctgcaggtatatcctgtgtccagagccaatgccgatcaaaggcag
ggcagagctggtcgtaccggtcctggtcaatgctacagattgtacacgcgacgacaatac
ttggatgaattattactaacaggagttcccgagatacaacgtaccaatttagctaataca
gtattactactgaaatcattaggagttcaagacttattggcgtttcatttcatggatcca
ccaccacaagataatatattgaattcattgtatcaattgtggatcttgggggcgcttgat
cataccggacgcttgaccccactaggacgacaaatggcagagtttcccttggatccaccg
caatgccaaatgctcatagttgcttctcaacttggctgtactgcggatatccttattatc
gtttcaatgctgtcggttccatcgatcttctaccgaccaaaaggtcgcgaagaagattca
gattcagcacgcgagaagtttcaggtaccagaatcagatcatttgacatatttaaatgta
tacaatcagtggaaggcaaacggttattcgagttcctggtgtaacgaccattttatacac
gcgaaggctatgcgcaaggtgcgggaggtacgatcgcagctcgaggaaattctgaagcaa
cagaagatggatgtcgttagttgcggcactgactgggatatcgtacgaaaatgtatctgc
tctgcctactttcatcaggcagcgcgtttgaaaggcattggtgaatacgtcaattgccgt
actggaatgccttgtcatcttcatcccacttccgcgctgttcggcatgggcttcacacct
gattacgtcgtataccacgaactcgtgatgaccgccaaagaatacatgcaatgtgtcact
gcggtggatggtcactggttggctgaattaggcccaatgttcttcagtgtgaaggagact
ggtcgaagtggccgtgcgaaacgacgacaagcaatgcaacacctccatgagatggagcat
caaatgaaggaggccgaggaggaaatgaaagctcgtgctcaagagcaacttgagcgagaa
caagcgtcagttcgaaagaaagagattttaacccctggtattagggaaccgggtactcct
gccccgtatcgtaacacgcccggaagattaggattgtaa
DBGET
integrated database retrieval system
