Atta cephalotes (leaf cutting ant): 105623347
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Entry
105623347 CDS
T04923
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acep
Atta cephalotes (leaf cutting ant)
Brite
KEGG Orthology (KO) [BR:
acep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acep03016
]
105623347
Enzymes [BR:
acep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105623347
Transfer RNA biogenesis [BR:
acep03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105623347
Prokaryotic type
tRNA splicing ligases
105623347
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
105623347
NCBI-ProteinID:
XP_012060133
UniProt:
A0A158NRH5
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINECCWRIKKGFQPNMKVEGVFYVNNTLERLMFDELRNACRPGAV
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLFERDVLPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAAYKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIE
EHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYMQVLEKLEQLGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaaggcaatatcaagaggagcttaaatatttggagaaaataaatgaatgttgt
tggagaatcaagaaaggctttcaacctaacatgaaggttgaaggagtgttttatgtaaat
aatacattggagcgattaatgtttgatgagttgcgcaatgcatgtcggccaggtgcagtt
ggaggcttccttcctgggatgaaacagattgctaatgtggctgctttacctggtattgta
tggaggtctgtcggattaccagatgtacactctggctatggctttgctattggtaatatg
gcagcatttgatatggatgatccaaagtcaattgtatcacctggtggtgtaggctttgat
attaattgtggtgttcgtttattacgaacaaatttattcgagagagacgtcttaccaata
aaagaacaacttgcgcaaagtatgtttgatcacattccagttggtgttggatctaaagga
attataccaatgaatgcacgggatttagaggaagcgttagaaatgggaatggattggtct
ttgagagaaggttacatttgggctgaagataaagaacattgtgaagaatatggaagaatg
cttaacgctgatccatcaaaagtgtcaatgagagctaagaaacgcggacttcctcaatta
ggtacattaggagctggaaaccattacgcagagattcaagtagtagatgaaatatatgat
aaatgggctgcatataaaatgggtattgaagaaaaaggacaaatttgtgttatgattcat
tcgggaagcagaggatttggtcatcaagttgctacagatgcacttgtacaaatggaaaaa
gctatgaaacgtgacaatattgaaaccaatgacaggcaacttgcatgtgctcatattaaa
tctcaagaaggtcaagattatttgaaagcaatggcagctgctgctaattttgcttgggtt
aatagaagttctatgacattccttagccgacaggcatttgcaaaacaattcaactcgtct
cccgatgatttagatatgcatgttatttatgatgtgtctcataatattgccaaaatagaa
gaacatatagttgaaggaaaacaaaagacacttttagttcatagaaagggatcaacaaga
gcctttccaccgcaccatcctttgattcctgtagattatcagttaacaggtcaaccagtt
ttaattggtggtacaatgggtacatgcagttatgttttgactgggacagaacagggtatg
aaagaaacatttggatcaacatgtcatggtgccggccgtgctctttcaagagcaaagtca
cgtagaaacttggattacatgcaagttttggaaaaattagaacaattaggtatatctatt
cgagttgcttcaccaaaattggttatggaagaagcaccggaatcctataagaatgtaaca
gacgttgttaatacttgtcacgcagctggaatttccaagaaatgcatcaaactgcggcca
atcgcggttattaaaggataa
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