Atta cephalotes (leaf cutting ant): 105625132
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Entry
105625132 CDS
T04923
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
acep
Atta cephalotes (leaf cutting ant)
Pathway
acep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105625132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acep03019
]
105625132
03041 Spliceosome [BR:
acep03041
]
105625132
Messenger RNA biogenesis [BR:
acep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105625132
Spliceosome [BR:
acep03041
]
Complex B
Other components
Prp19-related factors
105625132
Complex C
105625132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
PPR
TPR_10
NRDE-2
Mad3_BUB1_I
ARM_TT21_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
105625132
NCBI-ProteinID:
XP_012061861
UniProt:
A0A158NWF3
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MLERKDNEGNIYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTNSKNLNVVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCIIDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEE
CYITRTRQVFDRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIERLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLKKLIEEAARNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRI
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLYTLWVAFGKFYEENGQIEDARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDDNT
REICLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNQISDVTLDAMRLLDNKITSNADNAADVKGVIKF
VRGVTEKDGKSESHVNNPDEINIDIDDENDNDVEIEEEEVPIEKQTIPSQVFGSLKAIQT
EED
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagataacgaaggaaatatatatgcctttaatgaggaggatttacca
tacgaagaagaaattttacgaaatccatattcagtcaaacattggcaacggtatattgat
catcttaaaagtacaaacagtaagaatttaaatgtggtatatgaacgagcattaaaagaa
cttccgggcagttacaagctatggtataattatcttcgacaacgtgtgagtcaactaaaa
ggtcgatgtataatagatccattgtacgaagatgttaataatgcatttgaacgagcttta
gtatttatgcataaaatgccacgtatatggatggattattgtaccctaatgactgaagaa
tgttatataacacgaacgcgtcaagtgtttgatcggtctcttagagcgcttcctattacg
cagcatcatcgtatatggccattatatattcatttcttaaagaaacataatgtatatgaa
actgctgttagagtctttagaagatacttaaagctagcaccagaagatacagaagaatat
attgaatatttaatatcgattgaaagactcgatgaggctgctgtgaaacttgcacagatc
gtcaatcaagacgattttgtatcaaagcacggaaagtcaaatcatcaactatggaatgaa
ttatgcgatttaatatcaaaaaatccttccaagataaagtctttgaatgtagatgctatt
attagaggcggtttaagacgttatacagatcaattgggacctttatggaattcattagca
gattattacgtacgaagtggcctctttgaaagggcgagagatatttatgaagaagctata
cagacagttactactgtcagagattttacacaagttttcgacgcttatgcacaatttgaa
gaacttagtcttaagaaactcatagaagaggcagcaagaaatcctactgaagaagatgac
ataaagttagaattaagactggcgcgattggaacatctcatggaaagaagattattgtta
ctcaattctgtgttgttacgacaaaatccacacaatgtagcagaatggcataaaagaata
aaactttatgaagggcaaccacatgagataattaatacttatacagaagcagttcagaca
gtgcaaccacagttagcagttggtaaactatacacattgtgggttgcgtttggcaaattt
tatgaggaaaatggacaaatagaagatgctagagtagtatttgaaaaagcaactcatgta
ccatataccaaagtagacgatcttgcttcagtatggtgtgaatgggcggaaatggaaatt
agacatgggaattgcaaagaagctttaaaacttatgcatcgtgccactacaatgccagct
agaaaagtagcatatcatgatgaaacggaaacggtacaaatgagattatacaaatcttta
aaagtatggtccatgtatgcagatttggaagaaagtttcggtacatttaagacttgtaaa
gcagtatatgacaaaataatcgatttgaaaatcgcaactcctcaaattatcattaattat
ggactatttttggaagaaaataattactttgaggaagcatttagggcatatgaaaaaggt
attgcgctgtttaagtggcctaatgtttatgacatttggaatacatacctcacaaaattt
ttaaaacgttacggtggtacaaaattagaacgtacaagagatctgtttgaacaatgttta
gaatattgtccaccaaagtatgccaaagctttatatttgttgtatgcaaaattagaagaa
gaacatggtttagcaagacatgccatgtctgtatatgaacgtgcgacgaatgctgtcctc
ccagaagaaagattcgacatgttcaatatatatattaagaaagctgccgatatatatggt
gtaccaaaaactcggcaaatatatgaaaaggctatagaagtcttgaatgatgataacaca
agagaaatatgcttacgatttgcagaaatggaaaccaaattaggagaagtagatagagcg
agagcaatatatgcgcattgtagccaaatatgtgatccaagggtcacgtccaacttttgg
caaatttggaaagaatttgaagtcagacatggaaatgaggatacaatgcgtgaaatgctt
cgaatcaaacgtagcgtgcaagctatgtataatactcaagtaaacatgatgtccgcacaa
atgttgaataatgcatccaatcaaatatcagatgttacgttggatgctatgcgtttatta
gataataaaattacatcaaatgcagataatgctgctgatgttaaaggagttatcaaattt
gtacgtggtgtaacagaaaaagatgggaaatcagaatctcatgtgaataatccagatgag
attaatattgacatagatgacgaaaatgataatgatgtagaaatagaagaagaagaggta
ccgattgagaaacagactataccatcacaagtattcggtagtttaaaagcaatccaaact
gaagaggattaa
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