Atta cephalotes (leaf cutting ant): 105627929
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Entry
105627929 CDS
T04923
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
acep
Atta cephalotes (leaf cutting ant)
Pathway
acep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105627929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acep03041
]
105627929
Enzymes [BR:
acep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105627929
Spliceosome [BR:
acep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105627929
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
SLFN-g3_helicase
Flavi_DEAD
Cas3-like_C_2
nSTAND_NTPase5
T2SSE
Motif
Other DBs
NCBI-GeneID:
105627929
NCBI-ProteinID:
XP_012064591
UniProt:
A0A158P483
LinkDB
All DBs
Position
Unknown
AA seq
890 aa
AA seq
DB search
MLSKMSKYRREESSSEDTDSEEERRKKDIKERDSFASRLRAKDESKRRNVATLPGSGAAE
AAKRLKIIETDTRDKLVPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFDENILTEKE
KHERAHKKQLLHLAKEHEKARELERMQRYHMPLEKGKTEPEPDTTEKEPPQSEQSKWESD
QMSSAVFRFGAKDRKAQQEYNLLMEDEMIEFVQVLHMPGYKDKKREESPPAHVKSLQTIQ
ETKKSLPIYPFRKDLIHAIKDHQVLIIEGETGSGKTTQIPQYLYESGFADDGKIIGCTQP
RRVAAMSVAARVAHEMAVKLGNEVGYAIRFEDCTSQRTRIKYMTDGTLHREFLSEPDLAS
YSVMIIDEAHERTLHTDILFGLVKDIARFRPDLKLLVSSATLDATKFSEFFDDAPIFRIP
GRRFPVDIYYTKAPESDYIEACVVSIIQIHITQPSGDILVFLTGQEEIETCQEMLQERVR
RLGSKLAELLILPVYANLPSDMQIKIFQPTPPGARKVVLATNIAETSLTIDNIVYVIDPG
YAKQNNFNPRTGMESLIVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYQHELEDNTVP
EIQRINLGNAVLTLKALGIDDLMHFDFLDPPPPETLILAMEQLYALGALNHRGELTKLGR
RMAEFPLDPMMAKMLLASEKYRCSEEVATIAAMLSVNGAIFYRPKDKIIHADAARKNFHV
PGGDHLTLLNVYNQWAQSDFSTHWCYENFIQHRSMKRARDVREQLVGLMQRVEMELVSGI
TETINIRKAITAGYFYHVARLSKGGCYKTAKHNQQVAIHPNSSLFQDLPRWLLYHELVLT
TKEFMRQVTEIESKWLLEVAPHYYKPKEVEDSTNKKMPKVAGRSRPDGTN
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgctttccaaaatgagcaaatacagacgagaagaatcctcgagtgaggatacagacagt
gaagaagaacgtcgcaagaaggatatcaaggaaagagatagctttgccagtcgtctcaga
gccaaagatgaaagtaaaagacgtaatgttgctacacttcctggatccggcgctgccgaa
gcagcaaagagacttaaaattatagagactgatacgagagataaactggtaccaaaattg
agaatcgagtctcgtaggaaatacctggagaaacgtaaagaggataaagttgcagaacta
gaagctgatattcttgatgacgaatatctatttgatgaaaacattttaacagaaaaagaa
aaacatgaaagagctcataagaaacagttactgcacttggcaaaggagcatgagaaggca
agagaactcgagcgtatgcaacgttatcatatgcctcttgagaagggtaaaacagaacca
gaacctgacacaacggaaaaggaaccaccgcaatctgaacaaagtaaatgggaatcagat
cagatgtcatcagctgtttttcgttttggtgctaaagataggaaagctcaacaagaatat
aatcttctcatggaggatgagatgatagagtttgttcaagtgcttcatatgcctggatac
aaggataaaaaacgggaagaaagtccacccgcgcatgttaaaagtttacaaactatacag
gagacaaagaaaagtttgcctatttatcctttcagaaaggatttgatacatgctatcaaa
gatcatcaggttttaataatagaaggtgaaacaggatcaggtaagacaacacagattcca
caatatttgtacgaatctggattcgctgatgacggtaagattattggatgcactcagcca
cggcgagtagctgctatgtcagtggctgcgagggtagctcatgaaatggccgttaagttg
ggtaatgaagttggctatgccattcgttttgaagattgcacatcgcaacgtactcgtatc
aaatatatgactgacggtacattacaccgagagttcctcagtgaacctgatttagcgtcg
tacagcgtaatgataatcgatgaagcacacgaacgtactttacacactgacattttattt
ggactggtgaaagatatcgcaaggtttcgtcctgatttgaagctgctggtatcatcggct
acattggatgctacaaaattcagtgaattctttgacgatgctcctatatttagaatacct
ggacgtcgttttcctgtcgacatttattacacaaaagcgccggaatcagattatattgaa
gcgtgtgtagtttcgattattcagattcacataacgcaaccatcgggtgatatattagta
tttctgaccgggcaggaggagatcgagacatgtcaggaaatgttacaagagagagtgaga
agactagggagcaaattggcagaacttttaattttacctgtttacgcaaatctaccaagc
gatatgcaaataaaaatatttcaaccaactccacctggcgcgaggaaggttgtactggca
actaatatagcggagacttcattaactatagacaacatagtatacgtgatagatcctggt
tatgcgaaacagaacaatttcaatccacgcaccggcatggagagtttaatagtcgtgccg
atcagcaaagcgtccgcgaatcagagagcaggacgcgccggaagagtagcacctggaaag
tgcttccgtttgtatacagcttgggcttatcagcatgaacttgaagataacaccgtgcct
gaaatacaacggattaatttgggtaatgcagtgcttactttaaaagctctcgggatagat
gatttgatgcatttcgatttcttggatccaccaccgcccgaaacgctgattttggcgatg
gaacagttgtacgcactaggtgcgctgaatcatcgtggagagctaacaaaacttggacgt
agaatggctgagtttccactggatccaatgatggcgaagatgctgttagccagcgagaag
tatcgctgttcagaagaagtggctaccatcgcggccatgctttcggtgaatggtgctatc
ttttatagaccgaaggataaaattatacatgcggatgctgcacgcaagaatttccatgta
cctggcggtgatcatctgactctccttaatgtgtacaatcaatgggcacagagcgatttt
agtacacattggtgttacgaaaatttcatacagcacagatccatgaaacgggcaagagat
gttagagaacagttagtaggtttgatgcagcgtgtcgagatggaattagtctcgggaatt
acagaaacaattaatattagaaaggctattacagctggttatttttatcacgtggcacgt
ttatcgaagggagggtgttacaaaactgcaaagcataatcaacaagtcgcgatacatcca
aatagttccctattccaagatcttccgcgttggcttctttatcacgaacttgtcctcact
actaaggaatttatgcgtcaggtgacagaaattgaaagcaaatggttgctcgaagtggca
ccccattattataagcctaaagaagtagaagattcaacgaacaaaaagatgccgaaagtt
gcaggcaggtcacgaccagatggaacgaattaa
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