Apis cerana (Asiatic honeybee): 107997662
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Entry
107997662 CDS
T07475
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
acer
Apis cerana (Asiatic honeybee)
Pathway
acer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107997662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acer03019
]
107997662
Enzymes [BR:
acer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107997662
Messenger RNA biogenesis [BR:
acer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107997662
mRNA degradation factors
3'-5' decay
Ski complex
107997662
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
DEXQc_Suv3
MTR4_beta-barrel
ResIII
ATPase_2
cwf18
RSC4_Ig_like
DUF3067
Motif
Other DBs
NCBI-GeneID:
107997662
NCBI-ProteinID:
XP_016911905
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MDIKNDTNKQMLEFELPPIWPDIRTELREYIECLDNLPIYHLDNAQCYWPRKPDILSLLN
CDIAPLGTTLKFNRDPVTGKLGEMHEVPLKSAGETARNSMSMTRAPGPPSDIIRGNTSNI
PFWPGGFDEPEMIVDSSMEEIDFENNLRTLAKGFSAGIEFKSDNYTPKEKTIQQEQESLE
SEKNEIESTADKINLMAIVEEEQNELDFWKLETKKIKEETKTKTSDISESAFDEITSLLE
ERDIPILNISEKRVETITEWAEQLDVSVPLTDFEKRIPELAMSFPYELDIFQKQAILKLE
EGCNVFVAAHTSAGKTTVAEYAIALSQKHMTKVIYTSPIKALSNQKYRELKRKFESVGLL
TGDLQINPNASCLIITTEILQSMLYCASEVLRDLEFVIFDEVHYINNDERGHVWEESVIL
LPQTVTIVMLSATVPNPLVFADWVGRTKKKKTYVISTLKRPVPLQHYLYTGTDGKTKDDK
FLVLGESGQFLLDGWYKATNSKNSKNQVNKNIKDIKKISIHQQMTPKQEQVLWSAFISHL
KTQNMLPVVVFMLSRKRCDMSAVLLRNVDLTTETEKHTIRAFFQNNIRHLKGTDRQLPQV
LMMQELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNMPARTVVFDSI
KKYDGNNFRILYPSEYVQMAGRAGRRGHDTTGMVIVMCRTSVPHFNELKNMMCGQAQNLE
SKFKVTYSMVLNLRRLNESVTVEAMMRRSFKESPVVINQNNYKMQLQEVENELSKLPLLT
DLQKKLSDFYRVAVDYLEYLKYLKPYFYETQKKAVKSLTPGRILLISYESHYNKLALLLG
TVQNKGNRQYRVLVLKNSDISKSIKEIEEKNQKINKSNKWYDIVALTKKEIFIPVGIPSD
EVLTIDAWNILEITNCQIKIDYNLVLANWEKRQIPRFKNEEPSQTYKTAMQELMTLSLNA
SHNSSTLKPYLEMKMNYDVDRKLQHLFDLKKAVYDMKCREILNFEEQFEIVYERSELESK
KNKLQLKLSDEGLSLYPEYTNAVALLKNLGYIDNDERVALKGRVALQMGNNELLITELIL
KNVLTVLQPAEIAALLSALIFQQRTDVEPNLTPELKRSCEEIKEIHAELEALEQHYQLVT
LQPLNFGLVEVVYDWAQAKSFAEIMEKTDVQEGIIVRCIQQLSETLRDVKNAATTIGDPV
LKEKMEEASTVIKRDIVFAASLYTQN
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggatataaagaatgatacaaataaacaaatgttagaatttgaattgccacctatttgg
cccgatattagaactgaattaagagaatatatagaatgtttggataatcttccaatatat
catttggataatgcacaatgttattggccaagaaaacctgatattctttctcttttgaat
tgtgatatagcaccacttggtactacattaaaatttaatagagatcctgttactggcaaa
cttggagaaatgcatgaagtacctttgaaatcagcaggtgaaactgctagaaattctatg
tctatgacacgtgcaccaggtccaccttctgatattattagaggaaatactagtaatatt
ccattttggccgggtggttttgatgaacctgagatgatagtggactcatcaatggaggaa
attgactttgaaaataatttaagaacattagcaaaaggatttagtgcaggcatagaattt
aaaagtgataattatactccaaaagaaaagacaatacaacaggaacaagaatcattggaa
tcagagaaaaatgaaattgaaagtacagcagacaagatcaatttaatggctattgtagaa
gaagaacaaaatgaacttgatttttggaaattagaaacaaaaaaaataaaggaagaaaca
aaaaccaaaacttcagatatttcggaatcagcatttgatgaaattacttcattattagaa
gaaagagatatacctattttaaatatttcagaaaaacgtgtggaaactataacagaatgg
gcagaacaattagatgtatctgttccacttactgattttgaaaaacgaattcctgaatta
gcaatgagttttccatatgaattagatattttccaaaaacaagctattcttaaattagaa
gaaggttgtaatgtgtttgttgctgcacatacatctgctggaaaaacaactgtagcagag
tatgctatagcattaagtcaaaaacatatgacaaaagtcatttatacatctcctataaaa
gcactttcaaatcaaaaatatcgtgaacttaaaagaaaattcgaaagtgtaggattatta
acaggagatttacaaattaatccaaatgcatcatgtcttattataaccacggaaatttta
caatctatgttatattgcgcatccgaagttttaagggatttagaatttgttatatttgac
gaagtgcattacattaataatgatgaacgtggtcatgtttgggaagaaagtgtgatactt
ctgccacaaacagttactatagtaatgttatctgcaactgtgccaaatcctctagtattt
gctgattgggttggtcgtacaaaaaaaaaaaagacatatgtaataagcactctaaaacga
cctgtaccccttcaacattatttatatactggaactgatggtaaaactaaggatgataaa
tttttagtattgggtgaaagtggtcaatttttattagatggatggtataaagcaacaaat
tctaaaaattcgaaaaaccaagtaaataaaaatattaaagatattaaaaaaatatctata
catcaacaaatgactccaaaacaagaacaagtattatggagtgctttcataagtcattta
aaaacacaaaatatgttgcctgtcgttgtctttatgttatcacgaaaacgatgcgatatg
agtgctgtattattaagaaatgtcgatcttacaactgagactgaaaagcacactattcga
gctttttttcaaaataatattcgacatttaaaaggtactgatagacaattaccacaagtg
cttatgatgcaagaattattagaaagtggaattggtatccatcatagtggtatattacct
attctgaaagaaatagtggaaatgcttttccaaactggagttgttaaattattatttgca
acagaaacatttgcaatgggtgttaatatgccagcgcgtactgtagttttcgattctata
aaaaaatatgatggtaataatttccgaatactttatccttctgaatatgtacaaatggct
ggtcgagctggtcgtagaggtcatgatacaactggaatggttatagttatgtgtcgaaca
tctgtgccacattttaatgaattaaaaaatatgatgtgtggacaagctcagaatttagaa
tcgaaatttaaagtaacatattctatggtattaaatctaagaaggctaaatgaatcggtg
acagtcgaagcaatgatgcgaagatcttttaaagaatcaccagtagttataaatcaaaat
aattacaaaatgcaattacaagaagtggagaatgaattatcaaaattgccacttttaact
gatttacaaaagaaactttccgatttttatcgagtagctgttgattatttagaatatctg
aaatatttgaaaccttatttttacgagacacaaaaaaaagcagtaaaaagtttaacaccc
ggaagaatattgcttatatcatatgaaagtcattataataaattagctttattattaggc
acagttcaaaataaaggtaatagacaatacagagtattagttcttaaaaattctgatata
tcaaaatctatcaaagaaatagaagaaaaaaatcagaaaattaataagtccaataaatgg
tacgatattgttgctttaacaaagaaagaaatatttataccagttggaattccatcagat
gaagtattgactatagatgcatggaatatattagaaattacaaattgtcaaattaaaata
gattataatttggttttggcaaattgggaaaaaagacaaatacctagatttaaaaatgaa
gaacctagtcaaacttataaaacagcaatgcaagaattaatgactctatctcttaatgct
tctcataattcttctacattaaaaccatatctagagatgaaaatgaattatgatgttgat
agaaaattacaacatttattcgatttaaaaaaagctgtgtatgatatgaaatgtagagaa
atattgaattttgaagaacaatttgaaattgtatatgaacgaagtgaattggaaagcaaa
aaaaataaattacaattaaaacttagtgatgaaggattaagtttgtatcccgaatataca
aatgctgttgcacttcttaaaaatttaggatatatagataatgatgaaagagttgcattg
aaaggtcgagtagctttacaaatgggaaataacgaattattaattacagagctcattctt
aaaaatgtattaactgtacttcaaccagctgaaatagcagcattgttatctgctttaata
tttcaacaacgaactgatgttgaaccaaatttaacaccggaattaaaaaggagttgtgaa
gaaataaaagaaatacatgctgaattagaagctttagaacaacattatcaattagtaaca
ttacaaccactaaactttggtttagtagaggtagtttatgattgggcacaagcgaaatca
tttgccgaaattatggaaaaaacggatgtacaagaaggaattatagtacgatgtattcaa
caattaagtgaaacattacgagatgtaaaaaatgcagctactactataggtgatcctgtt
ttaaaagaaaaaatggaagaagcttctactgttattaaaagagatattgtttttgctgca
tccttgtatactcaaaattaa
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integrated database retrieval system
