Apis cerana (Asiatic honeybee): 108002858
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Entry
108002858 CDS
T07475
Name
(RefSeq) uncharacterized protein LOC108002858 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
acer
Apis cerana (Asiatic honeybee)
Pathway
acer03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acer00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108002858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acer03021
]
108002858
03019 Messenger RNA biogenesis [BR:
acer03019
]
108002858
Transcription machinery [BR:
acer03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108002858
Messenger RNA biogenesis [BR:
acer03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108002858
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
HEAT_MROH2B_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
108002858
NCBI-ProteinID:
XP_016920286
LinkDB
All DBs
Position
Unknown
AA seq
1900 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSEI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVSQPIVAPVKLPP
GDPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKAELV
TVTTHITSSTETITQGKLVATTVPSQAPKVAKQFPAATASLLKNAGINNGPRIAPASSIA
VASAKPVSRDPRLKTTSVQDISVSSVDPRQRISTPTQKDSRGEAQAQLAANTNTVLSDQL
KQQILSKQAVTSTINKSPTNLAGSDTATLNASNNNNANTNLNNNNNNKNFSGNANKDAVS
HRTSQKKDPRLSSNSSGNLNSNSSKGSQNLSVGSNSSLSVGNRGGGSNDSKSKDSKISNS
RSSSSSTIDKSSASSKSSHRKVGNKSRSKQPQTSPSKVPKVDRDASPVRSKSREKDSGDS
SPSSRTSPQSFQTCKNRKKNTKSRKRSPSPPYRIPRRNDAKSNSVLNNSGGVTEEEQSGS
LIVSPPHPPTFKEIRPNARQRNYVRRNKDGSLSPERSPANAGNVQTAVEPTVESSSKDED
LRATLPLPGAATSVLEKKEDLDLRVLPPPVNTNKRQTSEHMESALAKKTKAEKFDALFGN
EDVDLRTLTHPKAGRPPTPPPPVISGEDGKDSWAKLKTPSKNDREKQANNNDDKRDNRDR
NRDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRSGRRGRENDKPEKNEDRNIEIIMKQAA
EQLNQGTITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDITGSSDRTS
TFSPSADKEMIRNKDHPIARNPNGPRWQTQPWQQPGPWAHPPGPPYGGPQGHFNSDFRPV
GPWQNPRHFGPMRPDYQYHGGFNHTMGPNPRLGPGMMGPIGPNGPLMSNLLPNGPIGPMG
NPPMSLSGMNGPGMIMNNGPMTNLISNPNMSLNASRNVSPSSSSKYDLEDSDQNYTTTMI
KNPNPHSRELPPPDPKLLDEIARDTMKSIDIDIQHIPREIRYYGQTGVVFMNWDDPREIG
FQDGIRRVLIDDKITITCAFNDQYKEFIYEGEVHRIKLGAPTRELYIDDKWYECYFGGMP
VTVDLGGKKVSVKLEGPPPLVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIE
GKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYVKIAG
MKGEEPIEAPPTPPLLTQKPKVDTASTPTQFSAVEHESTSQDGSDLRSTPKPDLQLDMLS
SALPSAMAPSSGLSYQAEPAENPPAAAPPLSLPLNMNELFQRLVETGIVSNLSEQKKQEE
EEKKEPEIIPVSFDKPETLKVKQPAIAAALYSGMQCSSCGARFAPELATRYSHHLDWHFR
QNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRVQSWFETEKQTADTEGITAEDSPQ
EAAQPSVPTGTDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEGKNYHPLCLDDYKEKS
LVRALEKSALALEETIEEMEDEKKESSDETFIEDNKTDELSVEALNTEFEIIEPSNDVIE
DNISEEPAERDNKEEETIIEDNIDCIEQNEKIEEQELEYNNKEDFDIESIEKENIETEIP
ETENVDKSFKNIKIKEEPIDEPEEQLEEEHFDFTNVEVKEEPIEPEPDPEESIITEPATV
DTTYAAVKSSIDGNVELDSTPAAIPTAPSRIKINITKPLCINKEPEESKEKEKSIIETST
EEIIEPLVPASIKPALQGRKLSNLPPVERGQELSGLCSIM
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaaatctaaggaaatagcagatgagtacatctcatcattgtctgatttg
acgatcaacagtaaaccattgattaatatgcttactatgctggctgaagataatatagaa
catgcaccagctattgttcaagctgttgaaaatcatttgcaaaaggtgagaagcgagatc
aaattacctgttctttatttgattgattcaattgtgaagaatgttaatggagcatatttg
aatctcttcactcaaaatattgtaaacactttttgtggagtatttgaaaaggtggatgag
aatacacgagctagtatgtggaaattaaggcaaacctggaatgatgtatttccagcaaag
aaattattttctttagatgtacgagtgcaaagtattgatcctgcctggccaatcactgcc
tctcccactagtgtttcttcgggatctattcatgttaatcctcgttttttttcaatgcct
caacaatcagcaacatctattgtctcacaaccaattgtagcacctgttaagcttccacca
ggtgatccagtaacacctacagaagcagcaatgcgagaacaattattaaaaaaacaacga
gaactgatagaattgcaaaagaaaaaaattgaattagaattacttcaagctaaagctaat
ttagaacaacaacaacggcaacttgataaacaagctgggaatttaaaagctgaactggtg
acagttacaacacatattacatcaagcacagaaactatcacacaaggaaaacttgttgca
actactgtgccaagccaagcacccaaagtagctaaacagtttccagcagcaacagcttca
cttctaaaaaatgcaggaataaataatggtccacgaattgcaccagctagtagtatagca
gtggcatcagctaaacctgtatctcgtgatccaagattaaagactacttcggttcaagat
atatcagtttcaagtgtggatcctcgtcagcgaataagtacaccaactcaaaaggattcg
cggggtgaagcccaagcgcagttagcagcaaatacaaacactgtactttcagatcaatta
aaacagcagatactttcgaaacaggctgtgactagcactatcaacaagtctccgacaaat
cttgccggctccgatactgcgacattaaacgctagtaataacaataatgctaatacgaac
ctcaacaataataataataataaaaatttcagtggtaacgcaaataaagatgctgtgtcg
catcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaacctaaac
agtaatagttccaaaggttctcaaaatctatctgtgggtagtaatagttctttatccgtg
ggtaatagaggaggtgggagtaacgattctaagtcgaaagattcaaagatttcgaattct
cgaagttcttcgtcatcgacaatcgataaatcttccgcttcctcgaaatcctcgcataga
aaagtaggtaataaatcgcgatctaaacaacctcaaacatctccgagtaaagtaccgaaa
gtcgacagagatgccagtcctgttagatccaaatctcgtgaaaaagacagtggagacagt
tcaccatcttcgcgcacctctcctcaatcctttcaaacctgtaaaaatcgaaaaaagaat
acaaaatcgagaaagcgcagtccaagccctccatatagaattcccaggcgtaacgatgca
aaatccaattcagttttaaataattctggtggtgttactgaggaggagcaatctggttca
ttgatagtctctcctcctcatccacctacatttaaagaaatcagaccaaatgctagacaa
agaaattacgtaaggcgtaataaggatggcagtcttagtcccgaacgctctccagcaaat
gctggaaacgttcaaactgctgtggaaccaactgtggaatcatccagcaaggatgaagat
ttgagagcaactctacctcttccaggtgcagccacttcggtattagaaaagaaagaggac
ttagatttacgtgtattaccaccaccagttaataccaataaaagacaaacttcagaacac
atggaatctgctttagcaaagaaaacaaaagctgaaaaatttgatgcattatttggaaat
gaagatgttgatttacgaacattgactcatcctaaagctggacggccacctacaccacct
ccacctgtaatatctggtgaagatggtaaagatagttgggcaaaattaaaaacaccatca
aagaatgatagagaaaaacaagctaataataatgatgataagcgggataacagagatcgt
aacagagataggttgggtagactcaggctttataacaaacttccagatgatcctaaagaa
agaaggagaacattatcgaatgaagatcaagataatagatcgggtcgacggggtcgagaa
aatgataaacctgaaaaaaatgaggatagaaatattgaaataataatgaaacaagctgct
gaacaattgaatcaaggtactattactaaaactcaatataatactcttattcaagaagtt
ttacatatgagtgaagatcgaaaattaagagctgcacaacggaaagaaaaggaagttggt
tctattgtatgggaaaaaggtgtaaatttagatataacaggttcatcagatcgtacatct
acattcagtccttctgctgataaagaaatgattagaaataaagatcatcctattgcaaga
aatccaaatggtcctagatggcaaactcaaccttggcagcaaccaggaccatgggctcat
ccaccaggacctccatatggtggtccacaaggacattttaattcagattttagaccagtt
ggtccatggcagaatccaagacatttcggtccaatgcgaccagattaccaatatcatgga
ggttttaatcatactatgggtccaaatcctcgtttaggacctggaatgatgggacctata
ggaccgaatgggccacttatgtcaaatttattacctaatggcccgatcggacctatgggt
aatccacctatgtcattatctggaatgaatggacctggaatgataatgaataatggacca
atgacgaatcttatatcaaatccaaatatgtctttgaacgcttcaagaaatgtatcacca
agttcatcctcaaaatatgatcttgaagatagtgatcaaaattatactacgacaatgata
aagaatccaaatcctcacagtcgtgaattaccaccaccagatccaaaattattggatgaa
attgcaagagatactatgaaatctatagatatagatatacaacatataccacgtgaaatt
agatattatggtcaaactggagttgtttttatgaattgggacgatccaagagaaatcgga
tttcaagacggtatacgacgagttttaatcgacgataaaatcactataacttgcgcattt
aatgatcaatataaagaatttatttatgaaggtgaagttcatcgaattaaattaggtgca
ccgacgagagaattatatattgatgataaatggtatgaatgttatttcggtggtatgcct
gtaacagtagatcttggtggtaaaaaggttagtgtcaaattggaaggacctccacccctt
gttaagattggtactgtaaagagaacagacttagtagttgccaaaattaatcttattatt
aatgctcgtaatatggttcctgtatttttagatgcaaaacctcaaatatttgaaattgaa
ggaaaacctcatacgcttgaatttatagattcattacaaacagtccttttaaatggacga
ccatttaaagtagaatttggaggattgcctaaacctattatagtcagagataaaaaacat
tttataagattttcggtattacctagaggtgtccgaccaggatatgttaagattgcaggt
atgaaaggtgaagaacctattgaagcaccacctaccccacctttattgacacaaaaaccg
aaagtggatacagcttctacaccaacacaattctctgccgttgaacatgaatcaacatcg
caagatggttcagatcttagatctactcctaaaccggatttgcaattagatatgttatct
tccgctttaccttctgcaatggcaccatcatctggattatcatatcaagctgaaccagca
gaaaatccacctgcagctgctccaccattatcattgccattaaatatgaatgaattgttc
cagagattagttgaaactggtattgtatcaaatctttctgaacaaaaaaaacaagaagag
gaagaaaagaaagaaccagaaattattccagtttcatttgataaaccagagacgcttaaa
gttaaacaaccagctattgcagcagcattatacagtggtatgcaatgtagttcttgtggt
gccagatttgcaccggaattggcaactcggtatagtcatcatttagattggcattttaga
caaaatagacgagaaagagattctgcaaggaaagctcattcacgaccttggtattatgat
gtaagcgactggatacagtttgaagaaattgaagatttagaagatagagtacaaagttgg
tttgaaactgaaaaacaaacagctgatacagaaggtattactgcagaggattctcctcaa
gaagctgcacaacctagtgttcctactggaactgatgaagattctagatgtcaagtgtgt
catgatgcatttgaacaattttataatgaagaaaaggaggaatggcatttaagaccagca
attaattttgaaggaaagaattatcatccattgtgtctcgatgattacaaggaaaagagt
ctcgtgagagctttggaaaaatctgcattagcgcttgaagaaacaattgaagaaatggaa
gatgaaaaaaaggaaagctctgatgaaacgtttatagaggataataagactgatgaatta
agtgtggaagcattaaatactgaatttgaaataatagaaccgtcgaatgacgtaatagaa
gataatatatcagaagaacctgctgaaagagataataaagaggaggaaactataattgaa
gataatatagattgtattgaacaaaatgaaaaaatagaagaacaagaattagaatacaat
aataaagaagattttgatatagaaagtatagaaaaagaaaatattgaaacagaaatacca
gaaacagaaaatgtggataaatcttttaaaaatattaaaattaaagaggaaccaattgat
gaacctgaggaacaattagaagaagaacattttgattttactaatgtagaagttaaagaa
gaacctattgaaccagaaccagatcccgaagaaagtataataaccgaacctgcaacagtt
gacacaacatatgctgctgtgaagagctctatagacggaaatgtagaattagattctaca
cctgcagcaattccgacagcgccatctcgaattaaaattaatattacgaaaccattatgt
attaataaagaacctgaagaatcaaaggaaaaagaaaaatctataattgaaacatctact
gaagaaataatagaacctttggtgcctgcttctattaaacctgctttacaaggtagaaaa
ctttcaaatttacctcctgtggaaagagggcaagagttatcaggactctgctcaattatg
taa
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