Apis cerana (Asiatic honeybee): 108004263
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Entry
108004263 CDS
T07475
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acer
Apis cerana (Asiatic honeybee)
Pathway
acer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108004263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acer03019
]
108004263
03041 Spliceosome [BR:
acer03041
]
108004263
03009 Ribosome biogenesis [BR:
acer03009
]
108004263
03016 Transfer RNA biogenesis [BR:
acer03016
]
108004263
Enzymes [BR:
acer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108004263
Messenger RNA biogenesis [BR:
acer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108004263
Spliceosome [BR:
acer03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108004263
Complex C
U4/U6.U5 tri-SnRNP related factors
108004263
Ribosome biogenesis [BR:
acer03009
]
Eukaryotic type
Pre-60S particles
Helicases
108004263
Transfer RNA biogenesis [BR:
acer03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108004263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
108004263
NCBI-ProteinID:
XP_016922520
LinkDB
All DBs
Position
Unknown
AA seq
1022 aa
AA seq
DB search
MANFTEDLFDVFEEAEDIVEVIPAPVKSKNEDLNTSFNEKKTNLESGTKREFENDSDELV
SKKLRSDPVLEDLNIEELAPRIKIHTIETIESCTHEVAVPPDYEYVPLENKQSKPAKEYK
FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQ
KYREFFEEFKDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQ
HYIFPVGGDGIHLVVDEMGQFKEENFNRAMACLQHSDAAKGDSKGRKGGIRPSNAGQTNI
FKMVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDLNTLEEKKLVDEVFNNAMDVLNEE
DRRLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPAR
TVLFTASRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVVGKAIVQG
KPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNKVKDLQGAYNA
VTIDRYNHISSYHDIREQLEHLSTEFRCFLTKPEYLLPFLQPGRLVKVKNENEMFDWGII
VNFKKKNPKNPIRENTVIIIDILLHISKNSSEGCPIPCREGEEGDMEVVPVIHTLISQIS
SLRLYYPKDLRPSDNRKSVLKTIQEVKKRFPDGPPLLNPITDMHIEDDAFKDIVKKIEVL
EEKLYAHPLHKDPNVNILYEQFLHKEDLGNQLKQAKLELKQAKSILQMDELKCRKRVLRR
MAYCTASDVIELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDDKSNE
MPKSTEELSGPLRQMQDLARRIAKVSTEANLELDEDTYVERFKPYLMDVVYAWCKGATFL
QICKMTDIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASL
YL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggctaattttactgaagacttatttgatgtttttgaagaagcagaagatatagtagaa
gtgattccagctccagtgaaatcaaaaaatgaagatttaaatacatcgtttaatgaaaag
aaaactaatttagaaagtggcactaaacgagaatttgaaaacgattctgatgaattagtt
tctaaaaaattgcgatctgatcctgtattggaagatttaaatatagaagaattagcacca
cgtattaaaatacatacaatagaaacaattgaatcatgtacacatgaagttgcagttcct
ccagattatgaatatgtaccattagagaataaacaaagcaaaccagcaaaagaatacaaa
tttgtattagatcctttccaaaaagaagcaatcttatgtattgaaaataatcaatctgtt
ttagtttctgcacatacatcagctggtaaaactgttgttgcagaatatgcaatagcatgt
tcattaagagataaacaaagagtaatttatacaacacctataaaggcattaagtaatcaa
aagtatagagaattttttgaagaatttaaagatgtaggtttagtaactggagatgtaaca
attaatccaacagcaagtgtgcttattatgactactgaaatcttaagaaatatgctttat
cgtggatctgaggtaatgcgtgaagttggatgggtaatttttgatgaaattcattatatg
cgtgataaagaaagaggagttgtatgggaagaaacattaatattattaccagacaatgtg
cattatgtatttctttctgctactatacctaatgctagacaatttgtagaatgggttgca
catttacataagcaaccatgtcatgttgtttatacagattacagaccaactcctttacaa
cattatatatttcctgttggcggggatggtattcatttggttgtggatgaaatgggacaa
tttaaagaagagaattttaacagggcaatggcttgtttacaacatagtgatgcagctaaa
ggggatagtaaaggtcgcaaaggtggtattcgtccatcaaatgctggacaaacaaatatt
tttaaaatggtcaaaatgattatggaaagaaattttgcacctgtaattatatttagcttt
tccaaaaaagattgtgagatatatgccatgcaaatggctaaattagatttgaatacatta
gaagaaaaaaagttggtagatgaagtatttaataatgctatggatgttcttaatgaagaa
gatcgacgtttaccacaagttgaaaatgtattaccacttttaagacgaggaataggtatt
catcatggtggacttttacctattctgaaagaaactgtagaaatattatttggtgaagga
ttaataaaagcattatttgcaacagaaacttttgctatgggattaaatatgccagcacga
acagttttatttacagcatcacgaaaatttgatggtaaagactttcgttggattacatct
ggagaatatatacaaatgtctggtcgagcaggtagaagaggtttagatgaaaagggaata
gtaatattaatgatagatgaacaagttagtccagttgttggtaaagcaattgtacaagga
aaaccagatcctattaattcagcctttcatttaacttataatatggttttaaatcttttg
agagttgaagaaattaatcctgaatatatgcttgaaagaagtttttatcaatttcaaaat
caagcctctattccagatttatataacaaagtaaaggatttgcaaggtgcatataatgca
gtaactattgataggtataatcatatatcttcctatcatgatatacgtgagcaacttgaa
catcttagcactgaatttagatgttttttaacaaaaccagaatatttacttccattttta
caacctggaagattagtaaaagtaaaaaatgaaaatgaaatgtttgattggggtataatt
gtaaattttaaaaagaaaaatcctaaaaatccaataagagaaaatactgttatcattatt
gatatactacttcacatttctaaaaactctagtgaaggatgtcctataccttgtcgagaa
ggagaagaaggtgatatggaagtagttcctgttatacatacattaatttctcaaattagt
tcacttagattatattatccaaaagatttaagaccatctgataatagaaaaagtgtatta
aaaacaatacaagaagtaaaaaaaagatttccagatggaccaccattgttaaatcctatt
acagatatgcatattgaagacgatgctttcaaagatatcgtcaaaaagattgaagtatta
gaagaaaaattatatgctcatcctttacataaggatcctaatgtaaatattctatatgaa
caatttttacataaagaagatttaggtaatcagttaaaacaagctaaattagaattaaaa
caagctaaatcaatacttcaaatggatgaattaaaatgtagaaaacgagtattgcgaaga
atggcctattgtacagcatcagatgttatagaattaaaaggcagagtagcttgtgaactt
aatggagctgacgaattattaatgacagaaatgatttttaatggtttatttaattcattg
agtgtaccccaaatggtagcattaattagttgttttgtttgcgacgacaaatcaaatgaa
atgcctaagagtactgaagaattaagtggtccacttagacaaatgcaagatttagctcga
agaatagcaaaagtatctacagaagctaatctagaattagatgaagatacatatgtagaa
cgatttaagccatatttaatggatgttgtatatgcttggtgtaaaggagctactttttta
caaatttgtaaaatgacagatatatttgaaggttctattataagatgtatgcgtcgtttg
gaagaagttcttagacaattatgtcaagcagccaaaaatattggaaatacggatttagaa
aataaatttagtgaagcaattaaacttataaaacgtgacattgtctttgctgcatctttg
tatttgtaa
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