Acetobacter sp. JWB: DS739_01635
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Entry
DS739_01635 CDS
T05544
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
acet
Acetobacter sp. JWB
Pathway
acet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DS739_01635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acet03021
]
DS739_01635
03019 Messenger RNA biogenesis [BR:
acet03019
]
DS739_01635
Transcription machinery [BR:
acet03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DS739_01635
Messenger RNA biogenesis [BR:
acet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DS739_01635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
S1CSD-TOTE-2
ATPase_2
AAA
Motif
Other DBs
NCBI-ProteinID:
AXC25619
LinkDB
All DBs
Position
complement(335512..336810)
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AA seq
432 aa
AA seq
DB search
MHLAELKAKSPADLLACAEDLNIENASSLRKQDMMFAILKALADNDQAIYGEGTLEIMHD
GFGYLRSPESNYLPGPDDIYISPTQVRRFALRTGDTVEGQIRAPRDGERYFSMLKINTIN
FEPPDAVRHRINFDNLTPLYPERRLQMEVESQATAPEPKSEKGKKSAQKDFTPRVIDLVS
PIGMGQRALIVAPPRSGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARSVRGE
VIASTFDEPAHRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLT
GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELVLD
RKLADKRTFPAIDITKSGTRKEELLVDRATLSKMWVLRRILAPMGTMDAMDFLLDKLKYS
KTNNDFFEAMNN
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttgcggaactcaaggccaaatccccagcggatcttctggcctgcgctgaagac
ctgaatattgaaaacgcgtcatccctgcgcaagcaggacatgatgtttgccatcctgaag
gcgctggccgataacgaccaagcgatctacggcgaaggcacgcttgaaatcatgcacgac
gggtttggttacctgcgttcccccgaatcaaactaccttcccggcccggatgatatttat
atctcccccacacaggtgcgccgctttgccctgcgcacaggtgatacggtagagggccag
attcgcgccccgcgtgatggtgaacgctacttctccatgctcaagatcaacacgatcaac
tttgagccaccggatgctgtgcgccaccgaatcaactttgataacctgaccccactttac
cctgagcgtcgccttcagatggaagtggaaagccaggcaacagccccggaacccaaatcc
gaaaaaggcaaaaaaagcgcgcaaaaagactttaccccgcgcgttattgatcttgtttcc
cccattggtatgggccagcgcgcccttattgtggccccacctcgctcgggcaaaacggtt
atgctgcaaagcattgcctcttccatcagtgccaaccatccggaagttttcctgatcgtt
ctgctgattgatgaacgcccagaagaagttacggacatggcgcgctctgtgcgcggtgaa
gtgattgcctccacctttgatgagcccgcacaccgccacgtgcaggtaacggaaatggtg
ctggaaaaagccaaacgccttgttgaacacaagcgcgatgtggtgatcctgctggattcc
attacccgtctggcacgcgcctacaacaccgttgtgccctcatccggcaaggtgctgacc
gggggtgtggatgccaacgccctacaacggcctaagcgcttttttggtgccgcccgtaat
attgaagaaggtggttcccttaccattatcgccacggcgctgattgataccggcagccgc
atggacgaagtgatctttgaagaattcaaaggcacgggcaactcggaactggtgctggat
cgtaagctggcagacaagcgtaccttcccggcaatcgacatcaccaaaagcggcacccgt
aaggaagaactgctggtggatcgggctacactgtccaaaatgtgggttctgcgccgcatt
ctggcccctatgggcacgatggacgccatggacttcctgctggacaagctgaaatacagc
aaaaccaacaatgacttctttgaagccatgaacaactga
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