Acetobacter sp. JWB: DS739_04860
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Entry
DS739_04860 CDS
T05544
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
acet
Acetobacter sp. JWB
Pathway
acet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DS739_04860 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acet03021
]
DS739_04860 (rpoB)
03400 DNA repair and recombination proteins [BR:
acet03400
]
DS739_04860 (rpoB)
Enzymes [BR:
acet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DS739_04860 (rpoB)
Transcription machinery [BR:
acet03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DS739_04860 (rpoB)
DNA repair and recombination proteins [BR:
acet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DS739_04860 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
DUF6218
SPG4
Motif
Other DBs
NCBI-ProteinID:
AXC26175
LinkDB
All DBs
Position
1008756..1012928
Genome browser
AA seq
1390 aa
AA seq
DB search
MNAITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYETFLQANVSPDARTPTGLQEVF
RSVFPINDFAGRGRLEFVSYEFEEPKYDVEECIQRGLTYAAPLKVILRLIVWDVDEDTGS
RSIRDIKEQPVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYL
FAARVIPYRGSWLDFEFDAKDLLYVRIDRKRKLPVTTLLYALEGAASEAARKAKAAEGGD
VDSMEIKGMDANEILSYFYNAVTFIKTAKGWARPFDADSFRGLKLLAPLVDAETGEVVAE
AETKLTARMVRKIAEKTREVLVGEIDLLGRYIAHDIVNMQTGEIYGEAGEEITEARLAAL
EEAGITELPLLAIDAANGPWIRDTLTVDKNSTRDEALIDIYRVMRPGEPPTAETAEAMLN
GLFFDPDRYDLSAVGRVKMNMRLDMDVPDTVRVLRKEDILRTIKTLCDLKDGRGQIDDID
NLGNRRVRSVGELMENQYRIGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREFF
GSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG
PNIGLINSLATYAKVNKYGFIETPYRLVKDGVLQDGWKYLSAMEEEKLVVAQADAKVNDQ
GALTSDLISVRRNGDFRLVPPTEVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ
RQAVPLVRSDAPLVGTGMEAAVARDSGATIVAKREGIVDQIDGARIVVRATNAAGSTQGV
DIYRLRKYSRSNQSTCINQRPLVHVGDNVRAGDIIADGPSTELGELALGRNVLVAFMPWN
GYNFEDSILISERIAKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNLDEA
GIVYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGTSGTI
VDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYSRLREKLLGQVAGAGF
KGIRSGTEITDAVLDEHPRATWRQIVVASDSVMAELETLRREFDAAIARIQARFESKVEK
LQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGTAVD
LVLNPLGVPSRMNVGQILETHLGWACAKIGRGIGDMVDEYQRNGEKRQELLDRLKDVYGD
KVYSEDIANMSNDELIELANNLRKGVPIATPVFDGASIPDIEAMLEKAGVNKSGQSQLID
GRTGEPFERKTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEMLTVKSDDVSGRTKVYESIVREQDDFEAGIPESFNVLIKELKSLG
LNVELEQGAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaatcactaaatcgttcacaggacggaagcggattcgcaaaagtttcgggcgg
attcccgaaatcgccccgatgccgaacctgattgacgtgcagcgtgcgtcttacgagaca
tttcttcaggcaaatgtatcgcctgatgcacgtactccaacaggtttgcaggaggtattc
cgttccgttttccccatcaatgattttgcggggcgggggcgtctggaattcgtcagttac
gaatttgaagagcctaaatatgatgtggaagaatgcattcagcgtggtctgacatatgcc
gcaccgctgaaggttattctgcgcttgatcgtgtgggatgtggacgaagatacggggtct
cgttccattcgcgatattaaggaacagccagtctatatgggcgatatgccgctcatgaca
gacaatggaacctttatcgtcaacggtacggagcgtgttatcgtcagccagatgcaccgt
tcacccggtgtgttctttgatcatgataaaggtaaaacgcattcttctggcaaatacctg
tttgctgcgcgtgttattccttaccgtggttcctggctggacttcgagtttgacgccaaa
gatctgctttacgttcgtatcgaccgtaagcgtaagctgcctgtcaccacgctgctgtat
gcgcttgaaggtgcagcttctgaagctgcacgcaaagctaaagcggctgaaggcggtgat
gttgactctatggaaatcaaggggatggatgccaatgaaatcctctcctacttctataat
gctgtcacattcataaaaacagccaaaggctgggcccgcccgtttgacgcggattccttc
cgtggtctcaagctgctggcgccgctggtggacgcagaaaccggtgaagtggtggcggaa
gccgaaaccaagctgacagcccgcatggtgcgcaagatcgcggaaaaaacgcgtgaagtg
ctggtgggtgagatcgatctgcttggccgttacattgcccatgatattgtcaatatgcag
actggcgaaatctatggcgaagctggtgaggaaatcactgaagcacgtcttgctgctttg
gaagaagccggaattacggaacttcccctgctggcaattgacgctgctaacgggccgtgg
atccgcgatacgctcacagtagataaaaacagcacgcgtgatgaagcgctgattgatatc
taccgtgtaatgcgccccggtgagccgccaacggctgaaacagccgaagccatgctgaat
ggcttgttctttgatcccgaccgttatgatctttccgctgttggccgcgtgaagatgaac
atgcgtctggatatggacgtgccagatacagtgcgtgtgctgcgtaaagaagatattctg
cgcaccattaaaacactgtgcgacctgaaagacggtcgcggtcagattgacgatattgat
aaccttggtaaccgccgcgtgcgctcggttggtgaactgatggaaaatcagtaccgcatt
ggtctgttgcggatggagcgcgctatccgtgagcgtatgggctccgtggatattgatacg
gtcatgccgcatgatctgatcaacgccaaacctgctgctgctgctgtgcgtgagttcttt
ggttcttctcagctcagccagtttatggatcaaaccaatccgctgtctgaagtgacgcat
aagcgtcgcctttcagcgcttggcccaggtggtttgacccgtgagcgcgcaggctttgaa
gtgcgtgacgttcacccaacgcattatggtcgtatctgcccaattgaaacgccggaaggc
ccgaacattggtctgatcaactctctggcaacctatgccaaagtgaacaaatacggcttt
atcgaaacaccttaccgtctggtgaaggacggcgtgctacaggacggctggaagtacctc
tccgctatggaagaggaaaagctggttgttgcgcaggccgatgccaaggtgaatgatcag
ggtgcgcttaccagcgatctgatttctgtgcgtcgtaacggtgatttccgtctggttccg
ccaacggaagtaacggcgtgtgacgtttcgcccaagcagctcgtttccgttgctgcggcg
ctcattccgttcctggaaaacgatgacgcgaaccgtgcactgatgggttccaacatgcag
cgtcaggctgtgccgctggtgcgttccgatgcaccgttggttggcacaggtatggaagca
gctgtggcgcgtgattctggtgcaacaattgttgccaagcgcgaaggtattgtggatcag
attgacggtgcccgtatcgtagtgcgtgcaaccaatgcggcaggttctacgcagggtgta
gatatctaccgtctgcgtaagtattcccgttccaaccagtccacctgtattaaccagcgt
ccgctggtgcatgtgggtgacaatgtgcgggcaggcgatattattgccgatggtccttcc
acagagctgggtgaactggctctgggtcgtaacgtgctggtcgcgtttatgccttggaat
ggttacaacttcgaagactccatcctgatttccgaacggattgccaaggatgacgttttt
acctcgatccatatcgaggaattcgaagtcatggcccgtgataccaagctgggtcaggaa
gaaatcacgcgtgatattccgaatgtgggtgaagaagccctgcggaatttggatgaagcc
ggcattgtgtatgtaggtgctgaagttaatccgggcgatattctgatcggcaaggtaacg
ccaaagggcgaaagcccaatgacaccagaagaaaaacttctgcgtgccatctttggtgaa
aaagcctccgatgtgcgtgatacgtctctgcgtctgccgcctggcacatctggcacaatt
gttgatgtgcgtgtgttctcccgccgtggtgtggataaagatgaacgcgccatggccatt
gagcgtgcggaaatcgaacgtcttgccaaagaccgtgatgatgaacgcgctattcaggaa
cgctctttctatagtcgtctgcgtgaaaagcttctggggcaggttgctggcgctgggttc
aagggtattcgttctggaaccgagattacagatgccgttctggatgaacatccgcgtgcc
acgtggcgtcagattgttgtcgcttctgacagcgttatggcggagctggaaactctgcgg
cgtgaatttgatgcggctattgcacgtattcaggcacgttttgaaagcaaggttgaaaaa
cttcagcgtggtgatgaactgccacctggcgtgatgaagatggtcaaggttttcgtggct
gttaagcgtaagctgcagccaggggataaaatggccggtcgtcatggtaacaagggtgtg
gtttcccgcgttgttccagttgaagacatgccgttcctggaagacggcacggctgttgat
ctggtgctgaacccgctaggtgtgccttcacgtatgaacgtggggcagattctagaaacg
catctgggttgggcctgtgctaaaatcggccgtggcattggtgacatggtggatgaatac
cagcgtaatggcgaaaaacgtcaggaactgctggaccgtctgaaagatgtgtacggggat
aaagtttacagcgaagacattgccaatatgagcaatgatgagctgattgaactggccaat
aacctgcgcaaaggcgtgccgattgcaacgccagtgttcgatggtgcttccattccggat
attgaagccatgcttgaaaaagctggcgttaataaatctggtcagtctcagttgattgac
gggcgcacgggtgaaccgttcgaacgtaaaacaacggttggctacatctacatgctcaag
ctgcatcatcttgttgatgacaagatccatgcacgctctatcggcccatactcgctggtt
acacagcagcctctgggtggtaaggcgcagtttggtggtcagcgctttggggaaatggaa
gtgtgggcgctggaagcatatggcgcagcttacactctacaggaaatgctgactgtgaag
tcggatgacgtttctggtcgaaccaaagtttatgaatccatcgtgcgtgagcaggatgat
tttgaggccggtattccggaaagctttaacgttctgatcaaagagctgaagtctctgggt
ctgaacgtagaactggagcagggggccgagtga
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