Aciduliprofundum sp. MAR08-339: AciM339_0721
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Entry
AciM339_0721 CDS
T02396
Name
(GenBank) DNA topoisomerase I, archaeal
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
acf
Aciduliprofundum sp. MAR08-339
Brite
KEGG Orthology (KO) [BR:
acf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acf03032
]
AciM339_0721
03400 DNA repair and recombination proteins [BR:
acf03400
]
AciM339_0721
Enzymes [BR:
acf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AciM339_0721
DNA replication proteins [BR:
acf03032
]
Prokaryotic type
DNA Topoisomerases
AciM339_0721
DNA repair and recombination proteins [BR:
acf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AciM339_0721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Ribosomal_S27
Auto_anti-p27
DNA_ligase_ZBD
Zn_ribbon_recom
HMBD
PTS_IIB
Motif
Other DBs
NCBI-ProteinID:
AGB04601
LinkDB
All DBs
Position
623685..625928
Genome browser
AA seq
747 aa
AA seq
DB search
MNILVIAEKRNAAQRIAKILSGGKFETVKKGRNVYYSFSMGGDRYFVVPLRGHILQLDYP
EKFKSWNLKDLQKLVDEEPVKIVKEKGVASTLKNLAKDADLLIIATDYDREGELIGVEAL
SISGYRGKVKRAKFSALTEQEIKNAFENLVDVNYNLASAAETRQKIDLAWGASLTRFISL
ASRRRGKDYLSVGRVQSPTLALIVKREREIESFEPTPYWNIGAKFHKRRIFRGEHIANPI
WKEEEAKKIYEKIKDCNVGKVLEYVEGTKKIRPPSPFNTTEFLSEATKLGFSAARAMRIA
EDLYMGGYISYPRTDNTVYPRSLNINAILKSLEKSKFSEDVKKLQKERRKYPTRGKKESK
DHPPIVPMRGAKLDGERGKIYELIVRRFFATLAPDMEYEESTAKISILDEIFVSKGRRIL
NEGWHYYYPYSKFEEIPMPRLKEGEEIRVKGVEIVRKETKPPSRYTQSSLLKEMEKLNLG
TKSTRAEIIQKLFDRGYVRGNPIRPTDLGKALIDSLEKNKVDVVKPDMTAKLERDMDRIE
EGSVSGDYVVKESREMLKSILRSLEENKGDVGKSISSSMRTEIGECPDGGKLIYLERKKL
VVCEHGETAKFYNLPKTGHVEFLNRKCPVCGLPLIKVVRRGQSPEIRCLDSKCEYNRRKD
VVGKCPKCGGDLVIRQSRNGKRFIGCSNYPKCDVTYPLPQKGQIIPTGEVCPYCGAPLII
IRKKGRRDWKICPNMNCEYNRRKRDEE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
gtgaacattcttgtaattgcggaaaagcgcaatgcagcgcagcgtattgcaaagattcta
tccggcggaaaatttgaaacggttaagaagggaagaaacgtgtattactcgttctcaatg
ggtggtgataggtactttgttgtgcccctcagagggcacattctgcaactggattatcct
gaaaagttcaagagttggaatttgaaggacctgcagaaacttgtggacgaggagcccgtg
aagatcgttaaggagaagggtgtggcttcaactttaaaaaatttggccaaggatgctgat
ctgctgataatagccacagattacgatagggaaggagaattgataggcgtggaggccctg
agcatctccggttacaggggtaaagtaaagagggcaaagttcagcgctttaaccgagcag
gagataaaaaatgcgtttgagaaccttgtggatgtgaattacaatcttgcaagtgcagcg
gagacaagacagaagatagacctcgcatggggggcctctctaactcgctttatctctctt
gcctccagaagaaggggtaaggattacctatcagtagggagggtacaaagccccactctt
gccctcatagtcaagagggagagggaaatcgagagttttgagcccactccctactggaac
ataggtgccaaatttcacaagcgtagaatattcagaggggaacatattgcaaatccgata
tggaaagaggaggaggcaaagaaaatatatgaaaagataaaggattgcaatgtggggaag
gttcttgaatacgttgaaggaacgaagaagataagacccccttcgccgttcaacaccacg
gagtttcttagtgaggccactaaactgggattctccgcagcaagagccatgcgtatcgca
gaggatctctacatgggaggctacatatcttatcccagaacggataacactgtttatccc
agaagcttgaatataaatgccatactgaaatcacttgaaaaatcaaagttctccgaagat
gtgaaaaaacttcagaaggagcgcaggaagtacccaacacggggcaagaaggagagcaag
gatcaccctccaattgtgcctatgcgcggtgcaaagctggatggagagcgcggtaaaatt
tatgaactcatagttagaagattctttgccacccttgcccctgatatggaatacgaagag
agcactgcaaagataagcatattggacgagatctttgtaagcaagggaaggagaattctg
aacgagggctggcactattactatccctattccaaatttgaagaaatccctatgcccaga
ttgaaggagggtgaggagatcagggtgaagggtgtggaaattgtaagaaaggaaacaaag
ccccccagcagatacacccaatcctcattgctcaaagagatggagaaactgaatcttggt
acaaagagcacaagggccgagataattcagaaactctttgataggggttatgttaggggg
aatcccataagaccaacggatcttggaaaagcgctgatagattctctggagaagaacaag
gttgatgttgtaaagcccgatatgaccgctaaattggagagggatatggacaggattgaa
gagggctctgtgagtggagattatgttgtgaaggaatcaagagagatgctgaagagcata
ttgagatctctggaggagaataagggagatgttggtaagagtatcagcagttcaatgcgt
accgagattggcgaatgtcccgatggaggaaaactcatctaccttgagagaaagaaactt
gttgtatgcgagcacggagagactgcgaagttttacaacctgccaaaaacgggtcatgtt
gagtttctaaatcgaaaatgcccggtgtgtggattgcctctaataaaagtggttcgtaga
ggtcagagcccagagatccgatgcctggattcaaaatgtgagtataacaggagaaaggac
gttgttggcaagtgtcccaaatgcgggggagatcttgtgataaggcaatcccgcaatggc
aaacgtttcattggatgctcaaattatccaaaatgcgatgtgacctatcccctgccccag
aagggtcagataattcccacaggagaagtatgtccgtactgtggtgctccgttgattatc
ataagaaagaaagggcgcagggactggaagatctgtcccaatatgaactgcgagtacaac
aggaggaagagggatgaagagtga
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