Aciduliprofundum sp. MAR08-339: AciM339_0868
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Entry
AciM339_0868 CDS
T02396
Name
(GenBank) archaeal exosome-like complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
acf
Aciduliprofundum sp. MAR08-339
Pathway
acf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AciM339_0868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acf03019
]
AciM339_0868
Messenger RNA biogenesis [BR:
acf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AciM339_0868
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
AciM339_0868
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AGB04743
LinkDB
All DBs
Position
771398..772138
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AA seq
246 aa
AA seq
DB search
MGMKSDIRLIDDNGLRIDGRLPNQLRPIKMEVGVLERADGSAYIEWGGNKIMAAVYGPHE
AYPKHVQEADRAIVRARYSMAPFSVDERKRPGPDRRSIELSKVISEALTSVIFVEKYPRT
SIDVYIEVLQADAGTRVAGITVASLALADAGIPMRDLIVGCAAGKVDDVVVLDLNKEEDN
YGQADVPMAILPRTGEIALLQMDGDLTYEELTTAMEMAMDAAKKIHEMQVEALKRKYINE
EVSDDE
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgaagagtgatatcaggctcatagatgataatggacttcgcatagatggcaga
ctacccaatcaactgcgcccgataaagatggaagttggtgtgcttgaaagggctgatggc
tccgcttatatagagtggggtggaaacaagataatggctgccgtgtacgggccccacgag
gcctatccaaagcatgttcaggaggctgacagagcgattgtgcgcgcaaggtacagtatg
gctccatttagtgtggacgaacgcaagaggccgggccctgacaggaggagcatagaatta
agcaaggtcataagtgaggcacttacaagcgtaatctttgtggagaaatatccgagaaca
agcatagatgtgtacattgaagttcttcaggcggacgctggtacgagggtcgcaggcata
actgttgcctctcttgcacttgcagatgcgggcattcctatgcgagatttgattgttgga
tgtgctgctggcaaggtggatgatgtggttgttcttgatctaaacaaggaagaggacaat
tacggccaggctgacgttccaatggccattctaccacgcacaggagagatagcacttctt
cagatggatggagatctgacatacgaggaactcacaacagccatggagatggcaatggat
gcagccaagaagatacatgagatgcaggttgaagcgctcaagaggaagtatataaacgag
gaggtgagtgatgatgagtaa
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