Aciduliprofundum sp. MAR08-339: AciM339_1218
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Entry
AciM339_1218 CDS
T02396
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
acf
Aciduliprofundum sp. MAR08-339
Pathway
acf03420
Nucleotide excision repair
acf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AciM339_1218
03430 Mismatch repair
AciM339_1218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acf03400
]
AciM339_1218
Enzymes [BR:
acf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AciM339_1218
DNA repair and recombination proteins [BR:
acf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AciM339_1218
MMR (mismatch excision repair)
Other MMR factors
AciM339_1218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
Cas_Cas4
UvrD_C_2
Viral_helicase1
AAA_30
DUF2800
bL31_N
AAA_12
UPF0223
Motif
Other DBs
NCBI-ProteinID:
AGB05080
LinkDB
All DBs
Position
complement(1093005..1095779)
Genome browser
AA seq
924 aa
AA seq
DB search
MVNEICSDEIYNMIINGPFQNSPLSPAQKSAVESSAKHIRILAGAGAGKTETLTRRILYL
LLCKNVEPDTIVAFTFTEKAAQSMKSRIYSRIIDIKGEEYAHKLGKMYIGTIHSYALRIL
QDYFGYGNYDVMDDKQEMAFVMKRGWGIGVNKLRGQNYGDKCKKFLEAVNVVYDEIIPRD
KLSKKNPEFYHVFEKYESTLDEYHKLTFGRLIYLAVKNIKENPERLPMVKYLIVDEYQDI
NHAQEELIKLVGKNASIMVVGDPRQTIYQWRGSDDECFERFTEIYPDAETIVIPENRRST
KRIVEVGNKIANRFEKRKFDEMTPVKDEDGHVYVAKAKTPKEEAKWIVDQIENLVSEKNM
RYSDFGILLRSVTTSGDPIIQELKSRDIPYIVGGTIGLFRREEALALGKLFCWLWDEGFW
YDYHGKVENEELLDSALNDWISATKLLDLDEKDQVKEKLEIWREDVLNGKYHNFQEVYHE
VLNILKFKDLEPSNKLHAAIMANLGRFSVLLGDYENAVRLGGNKLKWNNSLLKGLIWYII
TYASTAYEEQPSEDIRAVDAVQVTTIHQAKGLEWHVVFIPSLVSRRFPSSHIAEKRMWLI
DRDLFPARRYDTKMEDERRLFYVAATRAKSTLVLSFFEKYNVKKATISCFLREVLEDNPR
NLEILRAEDKFKIDTDSPSVVTGEIEVSTFEAGEIVDYVKCPYFYRLRHVWNYQAPLAEE
LGYGNALHYSLRRAVELHKEGYNPLSAILEAVDKGFYLPYAPKYKAQKLKKSAENILVNY
VADHMEDISSVAEVEYRLEFPSKNSTIAGKVDVIIDKGDVVEVREYKTSTKVTKPEHVAL
QVRLYALGLKGLGYNVGRGSVVYLGEGEIDEIDVSQDTLRNAKIYTENLLSQIQNQNYNP
NPGDFCENCDYRDICKFRMGDEGE
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgaaatttgttcagatgaaatttataatatgattatcaatggacccttccaa
aattctcctttgtctcctgctcaaaaaagtgccgtagagagcagtgcaaaacatatacgt
attttagcaggtgcaggagctggtaaaacagaaactctaacaagaagaattctgtattta
ttgttatgcaaaaatgttgaaccagataccatcgtagcatttacatttacggagaaggcc
gcacaatctatgaaatccagaatatactcccgcataattgatataaaaggcgaagaatac
gcccataagttaggcaaaatgtatattgggacaatccacagctacgcccttcgcatactt
caagattatttcggatatggaaattacgatgttatggacgataaacaagagatggctttt
gttatgaagagaggttggggaataggagtgaataaactaaggggacaaaattatggagac
aagtgcaaaaaattcctagaggcagtaaatgttgtgtatgatgagattattccaagagac
aagttatccaagaaaaatccagaattttaccatgtgtttgaaaaatatgaaagtacttta
gatgagtaccacaaacttacatttggacgcctcatttatcttgcagttaaaaatataaag
gaaaatccggaaagattacccatggtgaagtatctcattgtggatgagtatcaggatata
aatcatgcccaagaggagctaataaaattagttggaaaaaatgctagcattatggttgta
ggagatccaagacaaaccatttatcagtggagaggttcggatgatgagtgttttgaaaga
ttcacggaaatatatccagatgcggaaactatagttattcctgaaaataggaggagcacc
aaaagaatagtagaagtaggaaataaaattgctaacagatttgaaaaaaggaaatttgat
gaaatgacacctgtgaaagatgaagatggacatgtgtatgtggcaaaagcaaaaactcca
aaagaggaagcaaaatggattgtagatcagatagagaatttagtaagtgagaagaatatg
aggtattcagattttggtattcttctaagaagtgtgactacctcaggcgatcccattatc
caagaactaaaaagtagggacatcccatacatcgtaggagggactattggtttatttaga
agggaggaggccttggctctaggcaagttattctgctggctctgggatgagggattttgg
tatgattaccacggtaaagtggaaaatgaagaactattagactctgcattgaatgattgg
ataagtgccacaaaattgttggatttagatgaaaaagatcaggttaaagaaaaattagag
atctggagggaggatgtgttaaatggcaaataccataacttccaagaggtttatcatgag
gttcttaacattctcaagtttaaggatttggaaccctctaacaaactccatgctgccata
atggcaaatcttggaagatttagcgttttactgggagattatgagaatgctgtgagattg
ggggggaacaaacttaaatggaacaattctttgctaaagggattaatatggtacattata
acatatgcatccacagcctatgaggagcaaccaagtgaggacatcagagcagtggatgct
gtgcaggtaaccacaattcaccaagcaaaaggtcttgaatggcatgttgtgttcatacca
tcattagtgagtagaagatttccctcttcacatatagcggaaaagagaatgtggctcata
gacagggatctattccctgcacgtagatacgatacaaaaatggaagatgaaagaagattg
ttttatgtggctgcaacaagagcaaaaagtacattggtgctaagcttttttgagaaatat
aatgttaagaaggcaactatcagctgcttcctacgggaggtcctggaagataatcccaga
aatttggagattttaagagcagaagataaattcaaaatagatactgattcaccttcagtg
gttaccggtgagatcgaggtatccacatttgaggcaggtgaaatagtggattatgtgaag
tgcccctacttttacagattaagacatgtatggaactatcaagctccacttgcagaggaa
ctgggatatgggaatgcacttcattactccttacgcagagctgtagaactccataaagaa
gggtataatccattaagtgcaatattagaggctgtagataaaggattctacttaccttat
gcaccgaaatataaagctcaaaaactaaagaaaagtgcggagaatattcttgtgaattat
gtggcagatcatatggaagacatttcctctgtggcagaggtggaatacagattggaattt
cccagcaaaaattccacaatagcaggtaaagtggatgtaatcatagataagggtgatgtt
gtggaggtgagggaatacaaaacatccacaaaagttaccaaaccggagcatgtggccctt
caggtacgtttatatgccttagggctcaaagggctcggatataatgtgggaaggggaagc
gttgtatatttaggtgaaggagaaatagatgagattgacgtgagccaagatactctccgc
aatgcaaaaatatatacggagaatttactatctcaaattcaaaatcagaactataacccc
aaccccggtgatttctgtgaaaattgcgattaccgggacatatgtaaattcagaatgggt
gatgaaggtgagtaa
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