Aciduliprofundum sp. MAR08-339: AciM339_1402
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Entry
AciM339_1402 CDS
T02396
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
acf
Aciduliprofundum sp. MAR08-339
Pathway
acf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AciM339_1402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acf03021
]
AciM339_1402
Enzymes [BR:
acf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AciM339_1402
Transcription machinery [BR:
acf03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
AciM339_1402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
HMBD
A2L_zn_ribbon
GpA_ATPase
DUF4796_N
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
AGB05258
LinkDB
All DBs
Position
complement(1277940..1281545)
Genome browser
AA seq
1201 aa
AA seq
DB search
MDTIVDVLFRKSVVNHHIASYNDLIPTPDNPNSVMQEIVDTTKVTDEDPPGVVTLDRTKT
GGKTIKIIFGRKNEYNDGITPTIKIGKPEIKEATGATVQITPMEARLRDMSYLAPLYLQI
MVVECDDSGCLEKEPEMVKIGDFPVMVKSKICTLHEDNIDDYLDSISKDKSILNWPYRKK
LEYVGEDPDDPGGYFIIGGSERVLVSLEDLAPNRVLVEKNERYNTVVETAKVFSQRRGYR
ALTIMEKKNDGILVVSVPAVAGTIPLVILMKALGLERDEDIYKAIVSDEKMSVIALANIE
EVENDKLYPPNGIRTQKDAIEYLEKRFAAGQAKEYREKKISQILDSSLLPHLGTDKEDRI
KKAYYLGRMAKRILELHLGLRKEDDKDHLANKRIKLSGDLLEDLFRMAFEALMKDLKYQL
ERTYNRKKGIRIRVSIRQDVLTQKIMHAMSTGNWVGGRTGVSQLLDRTSHMSTLSHLRRV
ISPLTRSQPHFEARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSEGYPEEKALKIL
RDLGVEDRQYETGNLARVYLNGNLVGYHGDGKSLTDDIRARRRKGLISHQINVRYDDRTQ
EVMVNCDKGRIRRPLLVVENGNIKYTSRHRELLERGKIDVDDLVREGVIEWIDAEEEENA
YIAVYAYDVPERCPHCNRVLGRGDVIWANPGEGEHVTLQCKHCGAEFEVEKKLTEEHTHL
EIDPLLILGAVAGCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQA
PIVKTKTMDFVNFMRRPAGQNAVVAIISYHGYNMQDAIVMNKAAVERGFGRSTFFRTYKS
EERRYPGGQEDRFEIPSPDVRGAMTEERYKLLDEDGLISPEMYVRGGDVLIGKTSPPRFL
EEEAELLGPQKRRESSVTMRPEEVGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFAS
RHGQKGVVGAIVPQEDMPFTEGGIIPDLIINPHAIPSRMTVGHILEMIGGKVGSLEGRFV
DGTVFKGEPEKALREALVRNGFKYNGKEIMYDGITGRKIEAEIFIGVIYYQKLHHMVAGK
FHARSRGPVQILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNSDGTVLYV
CGNPECGHIAMFDRKRGILRCPVCGNTTNIYPIETSYAFKLMHDELASLGVIMRLKVGDM
K
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggatacaattgtagatgtgttatttaggaaaagtgtggtgaatcaccatattgcctcg
tacaacgatctcattcccactcccgataatccgaacagtgtgatgcaggaaattgtggat
acaacaaaggttacagatgaggatccccctggagttgtaacccttgatcgtacaaagacg
ggaggaaagacaataaagataatatttggtagaaaaaatgagtacaacgatggcataact
cccacgataaagataggaaagcctgagataaaggaggccacaggtgccacagtgcagatt
actcccatggaggcaagattgagggatatgagctacttggcacctctgtacctgcagata
atggttgtagaatgcgacgattcagggtgtttggagaaggagccagagatggtgaaaatt
ggagattttccagttatggtgaaatcaaagatatgcacgctccatgaggacaacattgac
gattaccttgactcaatttcaaaggataagagcatattgaactggccctacagaaagaaa
ttggagtatgttggtgaggaccctgatgatccaggtgggtatttcataataggaggaagt
gaacgcgttcttgtgtcccttgaggaccttgccccgaatcgtgttcttgtggagaagaac
gagaggtataacacagtggttgagactgccaaagtattctcccagcgtcgtggctacaga
gctctcacaataatggagaagaagaatgatggcatccttgttgtatccgttcctgccgtg
gccgggacgatccctcttgttattctgatgaaggcccttggtcttgaaagggacgaggat
atttacaaggcaatagtcagtgatgagaagatgagcgttattgcgctagcaaacattgag
gaggttgaaaatgataaactctatcctcccaatggaattcgcacccagaaggatgccata
gagtatctggagaagagattcgctgcaggtcaggccaaggagtacagggagaagaaaata
tctcagatccttgattcttcactacttccgcatcttggcacggataaggaggataggata
aagaaggcctactatcttggaagaatggccaagcgtattcttgaacttcatcttggattg
cgaaaggaagatgataaggaccatctcgcaaacaagcgcatcaaactgtccggagatctg
cttgaggatctcttccgcatggccttcgaggcacttatgaaggatctgaaatatcaactc
gagagaacctataacaggaagaagggcataagaattcgtgtttcaataaggcaggatgtg
ctcacacagaagataatgcatgccatgagcacaggaaactgggttgggggaagaacaggt
gtttcgcagttgcttgatagaacctctcacatgagcacgctcagccacttgaggcgtgtg
atatctccattaacccgctcacagccccactttgaggcaagagatctgcatccaacccag
tggggtagattgtgccccaacgaaacccctgagggacagaactgcggcctggtgaagaac
gctgcacttataattgatgtatcggagggttatcctgaggagaaggcccttaagattctc
agggatctcggcgttgaagacaggcagtacgagaccggaaatcttgcaagggtgtacctt
aacgggaatctagtgggctaccatggggatggaaaatccctgacagacgatattcgtgct
cgtaggagaaagggtctgatttcgcatcagatcaatgtcaggtatgatgataggacgcag
gaagtaatggttaactgcgataagggcaggataaggagacctctcctggttgttgagaat
ggaaatataaagtacacatctcgccacagggagctccttgagaggggaaagatagatgtt
gatgaccttgttcgcgagggagttatagagtggatagatgcggaggaggaggagaatgcg
tacatcgccgtgtacgcctacgatgttccagagcgttgtccacactgcaaccgtgttctt
gggaggggagatgtgatctgggccaatccaggtgagggagaacacgtaaccttgcagtgc
aagcactgtggggcagagtttgaggtggagaagaaacttaccgaagagcacacacacttg
gagatagatccactactcatactgggagcggttgctggatgtgtgccctatccacatcac
aactcatcaccccgtatcaccatgggtgcagcaatgctcaaacaatcattgggcttacct
gctgccaattaccgtcggagacctgataccaggggccatctcctgcactacccacaggca
ccaatcgtaaagacaaagaccatggacttcgtgaactttatgcgcagacctgctgggcaa
aatgctgtggttgccataatatcctaccatggctacaatatgcaggatgcaatagtcatg
aacaaggccgctgtggaacgcggatttggacgcagtacattcttcaggacctacaagagc
gaggagcgtcgctatcccggcggtcaggaggatcgctttgaaattcctagtcctgatgtg
cgtggggccatgaccgaggagcgttacaaactccttgatgaggatgggctcatatctcca
gaaatgtacgtgaggggcggtgacgtgctcataggcaagacctcgccacccaggttcctt
gaagaggaggcagaattgctcggtccccagaagcgcagagagagcagtgttacaatgcgt
ccggaggaggtgggttgggttgattctgttcttcttaccgtgagtgagaataattcaagg
ctggtaaaggtcaaggttcgagaccagcgtattcctgaacttggagataaattcgcttca
aggcacggacagaagggcgttgtgggggccatagtgccccaggaggatatgccattcacc
gagggtggtataattcctgatctcataataaacccccatgcgataccctcaagaatgacc
gtggggcacatacttgagatgatcggaggcaaagtgggctctcttgaaggtaggtttgtg
gatggcactgttttcaagggagagcctgagaaggctctaagggaggcccttgtcagaaac
gggttcaagtacaacggtaaggagataatgtacgatggtataactgggagaaaaattgag
gcggaaatattcataggcgtgatttactaccagaagctgcatcacatggttgctggaaag
ttccacgcaagatcccgcggtcctgttcagattctcaccaggcagcccaccgagggacgc
agtaggctgggaggtttgagatttggagagatggagagggatacgctcataggccatggt
gctgcgatggtcataaaggatcgtctgcttgataattctgatggcacggtgctatatgtt
tgcggtaatccggaatgcggccacatagcgatgtttgacagaaagcgcggcatacttcgc
tgtcccgtttgcggaaatacaacaaatatctatcctatcgagacgagttatgcgttcaaa
ttgatgcatgacgagcttgcgtctcttggtgtaatcatgcgtttgaaggtgggtgatatg
aaatga
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