Pseudarthrobacter chlorophenolicus: Achl_1009
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Entry
Achl_1009 CDS
T00834
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ach
Pseudarthrobacter chlorophenolicus
Pathway
ach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Achl_1009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ach03019
]
Achl_1009
03400 DNA repair and recombination proteins [BR:
ach03400
]
Achl_1009
Enzymes [BR:
ach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Achl_1009
Messenger RNA biogenesis [BR:
ach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Achl_1009
DNA repair and recombination proteins [BR:
ach03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Achl_1009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF7343
PcrA_UvrD_tudor
HTH_IclR
DUF3553
MarR_2
HTH_Crp_2
HTH_24
Motif
Other DBs
NCBI-ProteinID:
ACL39003
UniProt:
B8HDJ8
LinkDB
All DBs
Position
complement(1108847..1110562)
Genome browser
AA seq
571 aa
AA seq
DB search
MSDDLALAALAASSFSLPDLRDGQLAGMSALVDGRDVLAVMPTGYGKSAIFQVAARYLHN
ATGHPAVVVSPLIALQEDQLDGLATDLGEGAAVAINSSHSDAEVEAAWEAAESGTAAFLY
LAPEQLAKDVTVERLARMGVSLFVVDEAHCVSSWGHDFRPDYLGLGTVRERLGHPPAAAL
TATASPPVRDEIVERLRMKDPLVLVHGFDRPNICLDVVRHHEDRDKRRAVLHQVAALARD
GQGLVYAATRKDTEKYAAKLAAEGLRAEAYHAGLSAAERERIHELFLADGLDVVAATTAF
GMGIDKPTVRFVVHADIPESLDAYYQEIGRGGRDGKPAAAVLHYRSEDLGLRKFFSTSTP
DPEKLLKVLKVLKDAGGPVPKSSLAELTGFPARRVTGLVNQLEEAGSVTTGKRGIRLAAK
AKLPALAAAAVERAEARQRVEQSRLTMMRAYAETDGCRRQFLLNYFGEDLPAPCNNCDAC
AEAARRPDESAEPGSGNGGGKKGKKTSDGGRRGPAAADDPFPLQSAVVHKEWGQGLVMRH
EDDVITVLFEQEGYKTLSRSAVLEHKLLKPA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgatcttgcccttgccgcccttgcggcttcatcattttccctcccggacctt
cgggacggccagcttgcagggatgtccgcgctggttgacggccgcgacgtcctggccgta
atgcccaccggctacggcaaatccgccatcttccaggtggccgcccggtacctccacaac
gcaacgggacatcccgccgtcgtggtttcaccgctgatcgccctccaggaggaccagctg
gacggcctggccacagacctcggcgagggggccgccgtcgccatcaactcatcccacagt
gacgccgaggtggaggccgcgtgggaggctgccgagtccgggacggcagcgttcctctac
ctggcgccggagcagctggccaaggacgtgacggtggagcgcctggcccgcatgggggtc
tccctgttcgtggtggacgaggcccactgcgtctcctcctggggccacgacttccggccc
gactacctgggcctgggcaccgtccgggaacggctgggccacccgcccgccgcagccctg
accgccaccgcctctcccccggtacgggacgaaatcgtggaacggctgcgcatgaaggac
cccctggtgctggtgcacggctttgaccgccccaacatctgcctggatgtggtgcgccac
catgaggacagggacaagcgccgcgccgtcctccaccaggtggctgcgctggcacgcgac
gggcagggcctggtgtacgccgccacccgcaaggacaccgaaaagtacgccgccaagctc
gccgcggaaggcctccgggccgaggcttaccacgccggcttgtccgccgcggaacgggaa
cgcatccacgaactcttcctggcggacgggctggacgtggtggcggccactaccgccttc
ggcatgggcatcgacaaacccaccgtccgtttcgtggtgcacgcagacatcccggaatcg
ctggacgcctactaccaggagatcggccgtgggggccgggacggcaaacctgccgccgcg
gtgctgcactaccgttccgaggatctgggcctgcggaagttcttcagtaccagtaccccg
gatccggagaagctgctcaaggtgctgaaagtcctcaaggatgccggtggacccgtgccc
aagtcgtccctggcggagctgaccgggttcccggcccgccgggtcacgggcttggtgaac
cagctcgaggaggcgggctcggtcaccacaggcaagcgcgggatacgcctcgccgccaaa
gccaagctgcccgcactggctgccgccgccgtcgaacgcgcagaggccaggcagcgcgtg
gagcagtcccgcctgaccatgatgcgcgcctacgccgagacggacgggtgccggcgccag
ttcctgctcaactacttcggcgaggacctgccggcgccgtgcaacaactgcgacgcctgc
gccgaggccgcacgccgtccggacgaatccgcggagcccggctccgggaacgggggcggc
aagaagggaaaaaagacgtccgacggcggccggcggggtcctgcggcggccgatgatccg
ttcccgctccagtccgcggtggtccacaaagagtggggccagggcctggtgatgcggcac
gaggacgacgtgatcaccgtgctgttcgagcaggagggatacaaaacactgtcgcgttcg
gccgtgctggagcataaactcctgaagcctgcttag
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