Pseudarthrobacter chlorophenolicus: Achl_1298
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Entry
Achl_1298 CDS
T00834
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ach
Pseudarthrobacter chlorophenolicus
Pathway
ach03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ach00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Achl_1298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ach03400
]
Achl_1298
Enzymes [BR:
ach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Achl_1298
DNA repair and recombination proteins [BR:
ach03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Achl_1298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ACL39289
UniProt:
B8HFF0
LinkDB
All DBs
Position
1433450..1437112
Genome browser
AA seq
1220 aa
AA seq
DB search
MSLPVTATHGPTLDGLRRALAPDQSFARVRAEAGRGFAVRGQDYQISAPAGLRPVLLAEM
ADGLAAAAAGQEGAADPGVVLAVTATGREAEDLAAALRAYLPADSVAEFPSWETLPHERL
SPRSDTVGRRLSVLRRLAHPESSTAERLRVVVAPVRAVVQPVVAGLGDLVPVTLKVGQDV
PFTDVVRSLADAAYARVDMVTHRGEFAVRGGIIDVFPPTEDHPIRVEFFGDEVDQMRWFA
VADQRSLSAPGIHHPTELHAPPCREILITASVMSRAAKLKAELPAAADMLEKIAGGIAVE
GMESLAPVLVDAMVPFVDQLPAESIAVVIEPEKVRTRAHDLSATNEEFLEAAWSTASDGG
AAPLDLSSQASAALHSASFRSLSETRGSALGHGVSWWSITSLAQDAELLPEIDVLNLHAR
EPRGYQGDVAEMMAFIGSHVRDQWRIVVATEGPGPAQRLAELFHENDIPCARVDSLEHEP
QAGIIEVTTAAVGRGFVLDGLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAVDPLQLV
AGDHVVHEQHGIGRFVELLQRKVAGGSDGVREYLVLEYAPSKRGAPGDRLFVPTDQLDQV
TRYVGGDTPVLSKMGGADWASTKSKARKAVKEIAGELIRLYSARMASRGHAFGPDTPWQR
ELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQ
VAVLVPTTLLAQQHYETFTERFSGFPLRVKPLSRFQSAKESKETAEGVKSGAVDVVIGTH
RLLSKDFEFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIR
ETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRELMREGQVFLVHNRVSTIERTAAKIRE
LVPEARVEVAHGKMSESRLEQIIVDFWERRFDVLVCTTIIETGLDISNANTLIVDGADKY
GLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKDLE
IRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELPVNAHLPHDY
VPGERLRLEAYRKLAAALTNEAIDEVKAELVDRYGELPLPAQNLVEVARFRVGAREAGLS
DVALQGNFIKFAPASLPESKVMRLTRMYPGSQSKPALDAILIPKPKTARIGGRDLQDAEI
LEWANGVIRNIFSDQPLAVS
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgagccttcccgttaccgccacgcacggccccacgctcgatgggctgcgccgtgcactg
gccccggaccagtctttcgcccgtgtccgggctgaggccggacgcgggttcgccgtaagg
ggacaggactaccagatcagcgcgcccgcgggattacggccggtgctgctcgcggagatg
gcggatggcctggcggccgccgcggcagggcaggaaggcgcggcagaccccggcgtggtg
ctggcggtcaccgccaccggccgcgaggcagaagacctggcggcggcgttgcgtgcctac
ctccccgcggactccgtggccgagttccccagctgggaaaccctcccgcatgagcgactc
tctccccgatcggacaccgtggggcgccggctctcggtcctgcgccgcctggcgcatccg
gaaagttcgacggcggagcggctgcgcgtggtggtggctcccgtccgcgccgtggtccag
ccggtggtggccgggctgggagatctggtgccggtcacgctgaaggtggggcaggacgtt
cccttcaccgacgtggtccgaagcctggccgacgccgcgtacgcccgtgtggacatggtc
acccaccgcggcgaattcgcggtccgcggcggcatcatcgacgtctttccgcccactgag
gaccaccccatccgcgtggagttctttggcgacgaggtggaccagatgcgctggttcgcc
gtggcggaccagcgctcgctgtcagcccccggcatccaccaccccacggaactgcatgcc
ccgccctgcagggaaatcctcatcaccgcgtccgtgatgtcccgggcggcgaaattgaag
gctgagctgcctgctgccgcggacatgctggaaaaaattgccggcggtatcgcggtcgaa
ggcatggaatccctggcaccggtgctggtggacgccatggtgcccttcgtggaccagctg
ccggcggagtccatcgccgtcgtcatcgaacccgaaaaggtgcgcacccgggcacatgac
ctgtcggccaccaacgaggaattccttgaggcagcgtggtccaccgcgtccgacggcggt
gccgcgcctttggaccttagctcgcaggcatcggcggcgctgcattcggcgagcttccgt
tcgctctcggagacccgcggttcagccctggggcacggcgtttcctggtggtccatcacg
tcgctggcgcaggacgcggaactcctccccgagatcgacgtcctgaacctgcacgcccgc
gaaccgcgcggctaccagggcgacgttgcggaaatgatggccttcatcggctcgcatgtc
cgcgaccagtggcggatcgtggtggccaccgaaggccccggcccggcccagcgcctggcg
gaactcttccacgaaaacgacatcccctgcgcccgcgtggacagcctcgagcacgagccc
caggcgggcatcatcgaggtgaccactgccgccgtcggccgcggcttcgtcctggacggg
ctgaaactgggcctgctcaccgaagccgacctgctgggccgcacctcggccgggtccacc
aaggacatgcggcgcatgccctccaagcggcgcaacgccgtcgaccccctgcagctcgtg
gcgggtgaccacgtggtccacgaacagcacggcattggccgcttcgttgagctcctgcag
cgcaaggtagccggcggcagcgacggcgtccgggaatacctggtcctggagtacgcgccg
tccaagcggggagcccccggtgaccggctgttcgtccccacggaccagctggaccaggtg
acccgctacgtgggcggggacacccccgtcctgagcaagatgggcggcgcggactgggcc
agcaccaagtccaaggcacgcaaggccgtcaaggagatcgccggcgagctgatccggctg
tactcggcccggatggcctcccgcggacacgccttcggccccgacaccccctggcagcgg
gagctcgaggaagccttcccgtacgtggagaccccggaccagctgaccaccatcaacgag
gtcaaggcggacatggagcgggaaatccccatggaccggctggtctccggcgatgtgggc
tacggcaagaccgagatcgccgtccgtgctgcgttcaaggcggttcaggacggcaagcag
gtggccgtcctggtgcccaccacgctgctggcccagcagcactacgagacgttcaccgag
cgtttctccggcttccccctgcgggtcaagccgctctcccgcttccagtccgccaaggag
tccaaggagaccgccgagggcgtgaagagcggcgcggtggacgtggtgatcggcacccac
cggctgctgtccaaggacttcgagttcaaggacctcggcctggtgatcgtggacgaggaa
cagcggttcggcgtggagcacaaggaagcgctgaagaagatgcgcaccaacgtggacgtc
ctggccatgagcgccacccccattccccggaccctggagatgtccctgaccggcatccgg
gagacgtccaccctggctacgccgccggaagagcggcaccccgtgctgacctacgtcggc
ccgtacacggacaagcagacctcggccgccatccgccgcgagctcatgcgtgaaggccag
gtgttcctggtccacaaccgggtgtccaccatcgagcggaccgctgccaagatccgtgag
ctggtgcctgaagcccgggtggaggtggcgcacggcaagatgtccgagagccgcctggag
cagatcatcgtggacttctgggagcgccggttcgacgtcctggtgtgcaccaccatcatc
gaaacgggcctggacatttccaatgccaacaccctgatcgtggacggcgcggacaagtac
gggctgtcccagctgcaccagctccgcggccgtgtgggccgtggccgcgaacgcgcctac
gcctacttcctgtacccctcggagaagccgctgggcgaggtggccctggaacggctcaag
gccgtggctgcccacaacgaactgggcgcaggcatgcagctggccatgaaggacctggag
atccgcggcgccggaaacctgctgggcggtgagcagtcaggccacatccagggggtgggc
ttcgacctgtacatccggctggtgggcgaggccgtggcggacttccgcggcgaggccgag
gaaaaggccgccgagatgaagatcgagctgccggtcaacgcgcacctgccgcatgactat
gtcccgggggagcggctgcggctggaggcgtaccgcaagctggccgcggccctgaccaac
gaggccatcgacgaggtcaaggccgagctggtggaccgctacggtgagctgccgctgccc
gcgcagaacctggtggaggtggcgcgcttccgggtgggggcccgcgaagcagggctgtcc
gatgtcgcgctgcagggcaacttcatcaagttcgcgccggcatcgcttcccgagtccaaa
gtgatgcggctgacccggatgtacccagggtcccagtccaagccggcactggacgccatc
ctcatccccaagccgaagacggcccggatcggtggccgggacctgcaggacgccgaaatc
ctggagtgggccaacggcgtcatccggaacatcttctccgaccagccgctggcggtgagc
tag
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