Pseudarthrobacter chlorophenolicus: Achl_4478
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Entry
Achl_4478 CDS
T00834
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ach
Pseudarthrobacter chlorophenolicus
Brite
KEGG Orthology (KO) [BR:
ach00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ach03016
]
Achl_4478
Enzymes [BR:
ach01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Achl_4478
Transfer RNA biogenesis [BR:
ach03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Achl_4478
Prokaryotic type
tRNA splicing ligases
Achl_4478
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Herpes_UL56
MPI_cupin_dom
Motif
Other DBs
NCBI-ProteinID:
ACL42429
UniProt:
B8HJ32
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All DBs
Position
pACHL01:413854..415038
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AA seq
394 aa
AA seq
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MFPVEMRGTARPVHLWAHEHEVEPAALQQLRNIASMEWVHGVRVMPDVHLGKGATVGSVI
AMKQAVSPSAVGVDIGCGVSAVKTSLTENDLDNLHALRLAIESAIPVGFNSHSRDVNLKR
LGLERGAKTFWDGFKDLHPAVQKLESRAHSQLGTLGGGNHFIEVCVDEAGAVWLTLHSGS
RNVGKSLAEVHIDIAKGLSHNNGIVDKDLAVFLAGTPEMDAYRRDLWWAQDYAARSRSVM
MGLFKEQVAKHFATANVTFGEEINVHHNYVSEEIIDGELMLVTRKGAIRAGKGNLALIPG
SMGTGSYVIRGRGNDASFQSASHGAGRKMSRNAAKKVFTVDDLIAQTAGVESRKDQAIVD
EIPGAYKDLHSVIDAQKDLVDVVQHLRTVLCVKG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgttccccgtcgaaatgcgcggcacagcccgtcccgttcacctctgggcgcacgagcac
gaggttgagcccgctgccctgcagcagctgcgcaacatcgcctccatggaatgggttcat
ggcgtccgtgtaatgcccgatgtccatttgggcaagggggccacggtcggctcggtcatc
gccatgaagcaggcagtatcgccgtccgccgtcggcgtggacatcggctgcggcgtctcc
gccgtcaagacatcactgaccgagaacgacctggacaacctgcacgcgctccggctcgcc
atcgaatccgccatcccggtcggcttcaactcccacagccgtgacgtgaacctgaagcgc
ctcggcctcgagcgcggtgccaagacgttctgggacgggttcaaggacctccaccctgca
gtgcagaagctggaatcccgtgcccactcccagctcggaaccttgggcggcggaaaccac
ttcatcgaagtctgcgtcgacgaggcaggcgccgtctggctgaccctccactcaggctcc
cggaacgtcggcaagtccctcgctgaggtgcacatcgacatcgccaagggcctgagccac
aacaacggcatcgtcgataaggacctggccgtgttcctggccggcacacccgaaatggac
gcctaccgccgtgacctgtggtgggctcaggactacgccgcccggtcccgctcggtgatg
atgggcctgttcaaggagcaggtcgccaagcacttcgcgacggcgaacgtcacgttcggc
gaggagatcaacgtccaccacaactatgtctccgaggagatcatcgacggcgaactcatg
ctggtcacccgcaagggcgccatccgggctggcaagggaaacctggcattgatccccggc
agtatgggcacgggcagctacgttattcgcggccgcgggaacgacgcatccttccagtcc
gcttcccacggggctgggcggaagatgagccgaaatgcggccaagaaggtgttcacggtc
gatgacctgattgcccagaccgccggagtcgagtcccgcaaggaccaggccatcgtcgac
gagatccccggtgcgtacaaggacctgcacagcgtcatcgacgcccagaaggacctggta
gacgtcgtccagcacctgcggactgtcctctgcgtgaaaggctga
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