Achromobacter sp. ES-001: KYT87_06465
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Entry
KYT87_06465 CDS
T10529
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acha Achromobacter sp. ES-001
Pathway
acha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KYT87_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acha03019
]
KYT87_06465
03009 Ribosome biogenesis [BR:
acha03009
]
KYT87_06465
Enzymes [BR:
acha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KYT87_06465
Messenger RNA biogenesis [BR:
acha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KYT87_06465
Ribosome biogenesis [BR:
acha03009
]
Prokaryotic type
rRNA processing factors
KYT87_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QYJ22876
LinkDB
All DBs
Position
complement(1450115..1453321)
Genome browser
AA seq
1068 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLELPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPH
HHIERLRHDDPRLEELKTSFELVEAPATNAPWQPRESEIKARPEALVKGITPSQPAPVSS
TPAAPAVAPAAPAAATGGLGGLFKRLVGWLTGGSEAAKPAPTAQEDSAKRAASGRGKGRA
GHDGQERRGERHGSDRNRNNRRGESRGEGAEGGEGSRHHARGNRRGEGERGDRQDRGDRS
NRGEGRGDREGQAAQAVLASNRPDQAELANGDDTGAGRNRRRGRGRNRREEGQSDAPMSE
QESMVAALAQSVATALPDTTKPAAETSTDAADAAEQTADGMPLAEGAEGAADPERKRRRR
RSRRGRRSQDEAGLAGSDEQLDDGSDDDIADQAEGIAAQAAPVETASAAPVQTQAVDTKV
TEAQAVEAQPAKVEAPAQAPVQAPVQAPVETQTQARAQAAAQAPVQAAAQAPVEAPAQAA
AVDAPVEATKPAAVQAAEPVAQPVQTAASVTEPVAVQAAEPAQAPAETPVKAAEVEPVVT
APAPVGEREAPAAAPGAAATAAATPAASPAPTVSQPIVVPAATPSAKAQALHDVVNAAGL
KWVETDPDRHAQTQLRIAAAHTPARLGRERKPVATVSNEPLVQVETRH
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaatgcgacgcatcaggaagaattacgcgtcgctatcgttgat
gggcaaaaactcatcgacctcgacatcgagactgccggccgcgaacaacgcaaaggcaac
atctacaaaggtgtcattacccggatcgaacccggcctggaagcttgcttcgtcaactac
ggtgaagaccgtcacggctttctgcccttcaaggaagttgctcgcagcttcttcaaggaa
ggcgtcgatgtccgtagcgcccgcatccaggatgcgctgcgcgaaggccaggaactgatc
gttcaggtcgaaaaagaagaacgcggcaacaagggcgcagccctgaccacgttcatctcg
ctggctggccgctacctggtcctgatgcccaacaacccccgtggcggtggcgtttcgcgc
cgcgtcgagggcgaagatcgccaggaactgcgcgacacgatggagcagcttgagctgccc
cagggcatgagcatcattgcccgtaccgccggcatcggccgcaatgtcgaagagctccag
tgggacttgtcctacctgttgcagctgtggaccgccatcgacggcgctgcccgcgacaac
tccgcgcccatcctgatctacctggaatccagcctggtcatccgggccatccgcgattat
ttctcgcccgaaatcggcgaaatcctgatcgataccgacgagatcgccgatcaggccacc
gccttcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgcgacgac
atcccgctgttctcgcgcttccagatcgaacaccagattgaaacggcgtattcgcgcacg
gtgcaactgccgtccggcggcgccatcgtgatcgaccacaccgaagcactggtttccgtt
gacgtgaactcggcccgctccacgcgcggcgccgacatcgaggaaaccgcgctgcgcacg
aactccgaagcggccgacgaagtggcccgccagttgcgcttgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgcgatgctctccatttcgaccgtgcccgcgtgcagatgggcaagatttcgcgcttt
ggcctgatggaactgtcgcgtcagcgcctgcgcccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgatgcggaatccagcgccctgcac
gtgctgcgcctgctgcaagaagaagccatgaaggaaaacaccgcggcggtccacgcccag
gtgccggtggatgttgccacctaccttctgaatgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctgatgctgatcccgaacaagcatctggaaacgccgcat
caccacatcgaacgcctgcgccatgacgacccgcgcctggaagagctgaagaccagtttc
gaactggtggaagctcccgccacgaacgcgccgtggcaaccgcgcgaaagcgaaatcaag
gcgcgtccggaagctctggtcaagggcatcacgccctcgcagccggccccggtctcgtcc
acgccggccgcgcccgccgttgcgcccgccgcaccggctgccgcaacgggcggcctgggc
ggcttgttcaagcgcctggtcggctggctgaccggtggctccgaagccgccaagcctgcc
cccaccgcccaggaagacagcgccaagcgcgccgcctccggtcgcggcaagggtcgtgcc
ggccatgatggccaggaacgccgtggtgaacgccatggctcggatcgcaaccgtaacaat
cgccgtggcgaatcgcgcggtgaaggtgccgagggcggcgaaggcagccgccaccacgcc
cgtggcaaccgccgtggcgaaggcgaacgcggtgaccgccaggatcgtggcgatcgcagc
aaccgcggcgaaggccgtggtgatcgcgaaggccaggcggcgcaagccgtcttggcgtcc
aaccgccccgaccaggctgaactggccaatggcgacgataccggcgccggtcgtaaccgc
cgccgtggccgtggccgcaaccgccgcgaagaaggccaatccgacgcgccgatgagcgaa
caggaaagcatggtggccgcgctggcgcagtccgttgcgaccgccctgcccgacaccacc
aagcccgccgccgaaacgtcgacggacgccgctgacgccgccgagcaaaccgccgatggc
atgcccctggccgaaggtgctgaaggcgccgccgatccggagcgcaagcgccgccgccgt
cgcagccgccgtggccgccgcagccaggacgaagcaggtctggccggtagcgacgagcaa
ctggacgacggttccgacgacgacatcgccgatcaagctgaaggcatcgccgcccaggca
gcgccggtagaaaccgcttccgccgcgccggtgcagacgcaggccgtcgacaccaaggtg
acggaagcacaagccgtcgaagcgcagcccgccaaggtcgaagcaccggctcaggcgccg
gttcaagcgccggttcaggctccggtggaaacgcagacccaagcacgcgcccaagccgcg
gctcaagccccggtccaagcagcggcacaggccccggttgaagctccggcccaagccgcc
gctgtggacgctcctgtcgaggccaccaagcccgccgccgtacaagccgccgagcccgtg
gcccagcccgtacaaacggctgcttcggtgaccgagccggttgccgtgcaggccgctgag
ccggcccaagctccggctgaaacgccggtgaaggccgccgaggtggaacccgtcgtgacg
gcgcccgctccggttggcgaacgcgaagccccggccgcagcaccaggtgccgcagcgacg
gctgccgcaaccccggctgcctccccagcccccaccgtgtcgcagcctatcgtggtaccg
gcagccacgccgtcggccaaggcccaggccttgcatgacgtcgtcaacgccgctggcttg
aagtgggtggaaaccgatccggaccgccacgctcaaacccagctgcgcattgccgccgcg
catacgccggcccgccttggccgcgagcgcaagccggttgccaccgtgtcgaacgaaccc
ctggttcaagtcgaaacgcgccactaa
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