Achromobacter sp. B7: DVB37_04525
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Entry
DVB37_04525 CDS
T05703
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
achb
Achromobacter sp. B7
Pathway
achb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVB37_04525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achb03019
]
DVB37_04525
Enzymes [BR:
achb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DVB37_04525
Messenger RNA biogenesis [BR:
achb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVB37_04525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
LBP_BPI_CETP_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYD63256
LinkDB
All DBs
Position
1014630..1016120
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AA seq
496 aa
AA seq
DB search
MTESTQSVAPPADAPAPTFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGA
AQTGTGKTAAFTVPILHRLMPLANTSASPARHPVRALILTPTRELADQVFESVKRYSKQT
PLRSAVVFGGVDIGPQKEALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRML
DMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATATTITQ
IAYKMSSDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQA
DRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGAS
GEAIALFTPDEERFLLDIEKLIKREVPRGTLDLPADAVARSHRRSEDRPSSSSSSSREGR
ESSREGSRGDRGGRSSDRRSGYTSGGSRQPVDDFFLKPYEPSASSSSEQEPAPKNDSGSS
SPKRQVAVLLGGSRKN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatccactcaatccgtagcaccccccgccgacgcgcccgcgccgacgtttgcc
gattttggactgcacccgctgctgctccagtccatcgccgaaaccggctacaccattccg
acgcccattcaggcgcaagccatccccgtcgtggtggaagggcgcgacgtcatgggcgcc
gcccagaccggcaccggcaagacggccgcgttcaccgtgcccatcctgcaccgcctgatg
ccgctggccaacaccagcgcctcgcccgcgcgccacccggtgcgcgcgctgatcctcacg
cccacgcgcgagctggccgaccaggtgttcgaaagcgtcaagcgctacagcaagcaaacg
cccctgcgttccgccgtggtgttcggtggcgtggatatcggtccgcaaaaagaagcgctg
cgtcgcggctgcgaaatcctggtggccacgcccggccgcctgctggaccacgtcgaacaa
aagaacgtgaacctgagccaggtcggcatcctggtgctggacgaagcggaccgcatgctg
gacatgggctttctgcccgacctggaacgcatcatccgcctgctgcccgcgcagcgtcag
ggcctgctgttttcggccacgttcagcaacgaaatccgcaaactgggccgttcgtacctg
aaccagccggtcgagatcgaagtcgcggcgcgcaatgccacggccaccaccatcacgcag
atcgcctacaagatgtccagcgacgccaagcgcgccgctgtcgtgcatctggtgaagtcg
cgcggtctgaagcaggtgatcgtgttttcgaacaccaagatcggcacggcccggctggcc
cgcgaacttgaacgcgatggcgtcaaggccgaatcgattcacggcgacaagacccaggcc
gaccgcatgaaggcgctggaagccttcaaggctggcgacctggaagtgctggtggccacc
gacgtggccgcgcgcggcctggacgtggccggcgtgccttgcgtcatcaactatgacctg
ccgtacaacgccgaagactacgtgcaccgcattggccggaccggccgcgcgggcgcatcg
ggcgaagccattgcgctgttcacgccggatgaagaacgcttcctgctcgacatcgaaaag
ctgatcaagcgcgaagtgccgcgcggcacgctggacttgccggccgacgcggtggcgcgc
agccatcgccgcagcgaagaccgcccgtcgtcctcgtcctcgtcctcgcgcgagggtcgt
gaatcaagccgtgaaggaagccgtggcgaccgcggtggccgttcatccgatcgccgctcg
ggctacacgtcaggcggctcgcgccaaccggtggatgatttcttcctgaagccctacgag
ccctcggcgtcgtcttcgtccgagcaagaacccgcgcccaagaacgacagcggttcgtcg
tcgcccaagcgccaggtggcagtgttgctgggcggctcgcgcaagaactga
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