Achromobacter sp. B7: DVB37_07865
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Entry
DVB37_07865 CDS
T05703
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
achb
Achromobacter sp. B7
Pathway
achb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVB37_07865 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achb03019
]
DVB37_07865 (rnr)
03016 Transfer RNA biogenesis [BR:
achb03016
]
DVB37_07865 (rnr)
Enzymes [BR:
achb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DVB37_07865 (rnr)
Messenger RNA biogenesis [BR:
achb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DVB37_07865 (rnr)
Transfer RNA biogenesis [BR:
achb03016
]
Prokaryotic type
tRNA degradation factors
DVB37_07865 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
HTH_20
HVO_A0261_N
DUF5818
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AYD63849
LinkDB
All DBs
Position
1739749..1742214
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AA seq
821 aa
AA seq
DB search
MAKRSNNESKNNRSTPLPEAPPDFDPDVPSREAILTALRAAGSPLSPVELAERMGVERAA
TMVGFERRLGAMERDGQLMPNRKGVLLLATKLDFVAGKVLGHRDGFGFLLRDDGGPDLFL
SPREMLKVLHGDRVLVKPTGEYRGKPEGTIVEVIERRTNKLVGRFLHEHGLSIVVPEDQR
IKHDILIPPSDTNGAQHGQVVAVEIMEQPTRHTQPLGRVAEVLGEIDDPGMEIEIAVRKF
DVPVEFSEAARKQAARIPDTVRKTDLKDRVDLRDVPLITIDGEDARDFDDAVYCEPVELG
TGQRKRPGWRLLVAIADVSHYVRPGDALDDDAIERGTSVYFPRRVIPMLPESLSNGLCSL
NPDVDRLVLVCDMVIPATGAKAGTVTAYQFYNAVMHSHARTTYTNIWAALQQPGGPAAAA
MRNVMPHVQHLYELFQLLVQGRKKRGAIDFDTVETKIVCNELGRIEQIVPSVRNDAHKLI
EECMLAANTCAADFMTRSKHPGLYRIHEGPTPERLQSLREFLRTMGLSLGGGDTPTAKDY
GDFLDTVRGRPDYQLLQSMCLRSMQQAVYSPDNMGHFGLAYPGYSHFTSPIRRYPDLLTH
RVIKALLAGQRYVPSLDDHAVVIGRTQKEHEHAIWEKMGLVLSATERRADEASRDVEAWL
KCWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDGLHELRGE
RTGMRYRLTDKVQVQVARVDLEARRIEFRLVQGTSFDALRKAAARGPDEPVRRVKKAAAP
KPAALKGQTAKERRADAKKAGKPPRASKRASPAKKATHKRH
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaacgatcgaataacgaatcgaaaaacaacagatcaacacccttgcccgaagcg
ccgccggacttcgatcccgatgtcccgtcccgtgaagccatcctgaccgcactgcgggcc
gcgggctcgccgttgtctccggtggaactggccgaacgcatgggcgttgagcgagccgcg
acgatggtgggtttcgagcgccgcctgggcgctatggaacgcgacggccagttgatgccc
aatcgcaagggcgttttgttgctggcgaccaaattggattttgtcgcaggcaaggtgctg
ggtcaccgtgacgggttcggtttcctgctgcgtgatgacggcggccccgacctgttcctg
tcgccgcgcgaaatgctcaaggtcctgcatggcgaccgcgtgctggtcaagcccacgggc
gaataccgtggcaagcccgaaggcaccatcgttgaagtcattgaacgccgcaccaataag
ctggtggggcgttttctgcacgagcatggcctgtccatcgtcgtgcccgaagatcaacgc
atcaagcacgacatcctgattccgcccagcgacaccaacggcgcccagcatgggcaggtg
gttgcggttgaaatcatggaacagcccacgcgccatacgcagcccctgggccgcgtggcc
gaggtgctgggcgaaatcgacgaccccggcatggaaatcgagatcgccgtgcgcaagttc
gacgtgcccgtcgaattctcggaagccgctcgcaagcaagccgcgcgcatccccgatact
gtccgcaaaaccgacttgaaagaccgcgtcgacctgcgcgacgtgccgctgatcaccatc
gacggcgaagacgcgcgcgacttcgacgatgcggtgtattgcgagcccgtcgaactgggc
accggccagcgcaagcgtccaggctggcgcctgttggtcgccattgccgacgtcagccat
tacgtgcgtcccggcgacgccctggacgacgacgccatcgagcgcggcaccagcgtgtac
ttcccgcgccgcgtcatcccgatgctgcccgaatcgctgtccaacggcctgtgctcgctg
aaccccgacgtcgaccgcctggtgctggtctgcgacatggtcattccggccacgggcgcc
aaggccggcacggtcaccgcctaccagttctataacgcggtgatgcattcgcatgcccgc
accacgtacacgaatatctgggccgccttgcagcagccgggcggccccgccgccgcggcc
atgcgcaacgtgatgccgcatgtgcagcatctgtacgaactgttccagctgctggtgcaa
ggccgcaagaagcgcggcgccattgatttcgacaccgtcgaaaccaagatcgtctgcaac
gaactgggccgtatcgaacagatcgtgccgtccgtgcgcaacgacgcccacaagctcatc
gaagagtgcatgctggccgccaacacctgcgcggccgacttcatgacgcgcagcaagcat
cccggcctgtaccgcatccacgaagggcccacgccggaacgcctgcaatcgctgcgcgaa
ttcctgcgcacgatgggcttgtcgctgggcgggggcgacacgcccacggccaaggactac
ggtgactttcttgacaccgtgcgcggccgtcccgactaccagctgttgcagtcgatgtgc
ctgcgctccatgcagcaggccgtctacagccctgacaacatgggccactttggtttggcc
taccccggctacagccacttcacgtcgcccattcgccgctaccccgatctgttgacccat
cgcgtcatcaaggccctgttggccggccagcgctatgtgcccagcctggatgaccacgca
gtcgtcatcggtcgcacgcagaaagaacacgagcacgccatctgggaaaagatgggtctg
gtgttgtcggccaccgagcgccgcgccgacgaagcatcgcgcgacgtcgaggcctggctc
aagtgctggttcgtcaaggaacgcgtgggcgaagacttcagcggcaccgtcaccggcgtg
gccagcttcggtatcttcgtcacgctggataccttgcacgtcgaagggctggtgcacgtg
tctgaactgggcggcgaatacttccagttcaatgatgggctgcatgagttgcgcggtgag
cgcaccggcatgcgctaccgcctgaccgacaaggtccaggtgcaggtggcgcgcgtcgat
ctcgaagcgcgccgcattgaattccgcctggtgcagggcaccagcttcgacgccttgcgc
aaggcggcggcccgtgggcccgacgagcccgtgcgccgcgtgaagaaggcggcagccccg
aagccggccgcgctgaagggccagaccgccaaggaacgccgcgccgacgccaagaaggcc
ggcaagccgccccgtgcgtccaagcgcgcatcgcccgccaaaaaggcgacgcacaagcgt
cattga
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