Achromobacter sp. B7: DVB37_13475
Help
Entry
DVB37_13475 CDS
T05703
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
achb
Achromobacter sp. B7
Pathway
achb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
achb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DVB37_13475 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
achb03400
]
DVB37_13475 (ligD)
Enzymes [BR:
achb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DVB37_13475 (ligD)
DNA repair and recombination proteins [BR:
achb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DVB37_13475 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AYD64820
LinkDB
All DBs
Position
2976475..2979096
Genome browser
AA seq
873 aa
AA seq
DB search
MADSLKTYRQKRNFQVTSEPMEGGQANEEARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPCFDPSVKRMAVQVEDHPIAYNQFEGQIPEGQYGAGKVIIWDEGVWAPVGDARKGYR
EGHLKFDLQGKKMQGRWALVRMKGKESDKQPPWLLIKDRDAYARPEREFSVVDEMPDSVV
PLRDNAATTQPAARRATPDAQQPGSDTDSAADARLPGRPSDLPDTFKPQLATLVEGMPPN
PDEWLYELKFDGYRLLVRIEGDSVRLYTRNGHDWSAKLPHIVQAFAKLPAKWAWVDGEVV
VLNEQGVPSFQALQNAFDNDRTGDIVFYAFDLPYIGLRDLRDEPLTVRRDLLAQLMETAD
DDHLRFSAAFKEAPSNLVASACKMGLEGIMAKRPSAPYVSRRTDSWLKIKCAQRQEFVIV
GYTAPQGSREGLGALLLAVHEDDGSLRYAGKVGTGFDTQGLLTLHKQLAALQTDKKTVSG
AQASGVQWVKPELVAEVSFSEWTSGGHIRHSVFRGLRQDKPARQITRERPSPPPKEEPAS
ASGKKSARQAKTEAKAKAQTNTKTTAAPAPARSTAVAPTRAKPARLTNPDRVIDPSTKLT
KLDLARYYGLVAPLMLEHLKGRPVSFLRAPAGIDGQLFFQKHLEAAMPGVKPLPKRLDPD
HPPLLEVPTPEAIMSAVQMNVVEFHTWNAVKTAIDKPDRVLFDLDPGEGVKWATMQQAAR
LVHTMLDELGLQSWLKTSGGKGLHVVVPLRRQYDWDTIKSFAQAIVVHLARTLPQIFVSK
SGPKNRVGKIFVDYLRNGFGATTVSAWSARARPGLGVSVPVAWDELDKLSSGAHWTISNI
HERLDAANAPWDDYAPQSVGQAMDALGFKRGAS
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagcctgaaaacctatcgtcaaaagcgcaatttccaggtgacctccgagccg
atggagggcgggcaggccaatgaggaggcgcgcgcgtttgtgatccagaagcattgggcc
agccggctgcattacgactttcggctggagctggatggcgccatgaaaagctgggcggtg
cccaaggggccgtgctttgatccgtcggtcaagcgcatggcggtgcaggtcgaagaccac
cccattgcctataaccagtttgaaggccagatacccgaagggcagtacggcgccggcaaa
gtcatcatctgggacgagggcgtgtgggcccccgtgggcgacgcccgcaaagggtatcgc
gagggccacctgaagttcgacctgcaaggcaaaaagatgcaggggcgctgggcgctggtg
cgcatgaagggcaaggaaagcgacaaacagccgccctggctgctgatcaaagaccgcgac
gcctatgcccgccccgaacgcgaattcagcgtggtcgacgaaatgccggacagcgtggtg
ccgctgcgtgacaacgcggccaccacccagcccgccgctcgccgggccacgcccgacgcg
cagcagccaggttcggacacggattccgccgccgacgcccggctgcccggccgcccgtcc
gacttgccagacacgttcaagccccaattggccacgctggtcgaggggatgccgcccaac
cccgacgaatggctgtacgaattgaagttcgacggctaccggctgctggtgcgcatcgag
ggcgattcggtcaggctatacacccgcaacggtcacgactggagcgccaagctgccgcac
atcgtccaggcctttgccaagcttcccgccaaatgggcctgggtggatggcgaagtggtg
gtgctgaacgagcagggtgtgcccagctttcaggcgctgcaaaacgcgttcgacaacgac
cgcactggcgacatcgtcttttacgccttcgacttgccctatatcggcttgcgagacctg
cgcgacgaaccgctgaccgtgcgtcgcgacctgctcgcgcagctgatggaaaccgctgac
gacgaccacctgcgctttagcgcggccttcaaggaagcgccgtcgaacctggtggcctcg
gcctgcaagatggggctggaaggcatcatggccaagcggccgtcggcgccctatgtgtcg
cggcgcacggacagctggctgaagatcaagtgcgcgcagcggcaggaattcgtcatcgtc
gggtacaccgcgccgcagggctcccgggaagggctgggtgcgctgttgctggcggtgcat
gaagacgatggctcgctgcgctatgcgggcaaggtcggcaccggttttgatacgcagggc
ctgcttaccttgcacaaacagcttgccgccctccagaccgacaaaaaaacggtcagtggc
gcgcaggccagcggcgtgcagtgggtcaagcctgagctggtggccgaggtctcgttcagc
gaatggaccagcggcgggcatatccgccattccgtcttccgagggctgcggcaggataaa
cccgcccgccagatcacacgcgaacggccgtcgcccccgcccaaggaggagccggcgtcc
gcgtcgggcaaaaaaagcgcgcgccaggcaaagacagaggcaaaggcaaaagcacagaca
aacacaaagacaactgccgctcccgcgccggcccggtcaacggcggtggcgcccacgcgc
gccaagcccgcgcggctgaccaacccggaccgcgtgatcgacccgtccaccaaacttacc
aagctggacctggcgcgctattacgggctggttgccccgctgatgctggaacatctgaag
ggccgccccgtgtctttcctgcgcgcgcccgccggcatcgacgggcagctgttctttcag
aagcacctggaagccgcgatgccgggcgtcaagcccttgcccaagcggctggacccggat
catccgccgttgctggaggtgcccacgcctgaagccatcatgtcggccgtgcagatgaac
gtggtggaattccatacctggaatgccgtgaaaacggccatcgacaagcccgaccgtgtc
ctgttcgacctggacccgggcgaaggggtgaagtgggcgacgatgcagcaggccgcccgg
ctggtgcacaccatgctggacgaactgggcctgcaaagctggctgaaaaccagcggcggc
aagggcctgcacgtcgtcgtgccgctgcgccgccaatacgactgggacaccatcaagtca
ttcgcgcaagccatcgtggtgcatctggcccgtacgttgccgcagatattcgtgtccaag
agcgggccgaagaatcgcgtgggcaagatctttgtcgactacctgcgcaacggctttggc
gccactaccgtgtcggcctggtcggcgcgcgcccggcccggcctgggcgtgtcggtgccc
gtggcatgggacgaactggacaagctttccagcggcgcgcactggaccatcagcaacatt
cacgaacggctggatgccgccaatgcgccgtgggacgactatgcgccgcaatccgtgggg
caggccatggacgcgctgggtttcaagcgcggggcctcatga
DBGET
integrated database retrieval system
