Aquila chrysaetos chrysaetos (golden eagle): 115344337
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Entry
115344337 CDS
T08023
Symbol
COL1A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
achc
Aquila chrysaetos chrysaetos (golden eagle)
Pathway
achc04510
Focal adhesion
achc04512
ECM-receptor interaction
achc04518
Integrin signaling
achc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
achc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115344337 (COL1A1)
04518 Integrin signaling
115344337 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115344337 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115344337 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
achc00536
]
115344337 (COL1A1)
Glycosaminoglycan binding proteins [BR:
achc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115344337 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
115344337
NCBI-ProteinID:
XP_029877298
LinkDB
All DBs
Position
8:complement(3390456..3406060)
Genome browser
AA seq
1453 aa
AA seq
DB search
MFSFVDSRLLLLIAATVLLTRGQGEEDIQTGSCIQDGLTYNDKDVWKPEPCQICVCDSGN
ILCDEVICEDTSDCPNAEIPFGECCPICPDTDASPVYPESAGVEGPKGDTGPKGDRGLPG
PPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQMSYGYDEKAGGMAVPGPMGPAGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGEPGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPSGPAGARGNDGAPGAAGPPGPTGPAGPPGFPGAAGAKGETGPQGARGSEGPQGARG
EPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLPGPAGERGAPG
SRGFPGADGIAGPKGPPGERGSPGPAGPKGSPGEAGRPGEPGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAVGAAG
KDGEAGAQGPPGPTGPAGERGEQGPAGAPGFQGLPGPAGPPGEAGKPGEQGVPGDAGAPG
PAGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGNQGPPGLQGMPG
ERGAAGLPGAKGDRGDPGPKGADGAPGKDGLRGLTGPIGPPGPAGAPGDKGEAGPPGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGETGDAGAKGDAGPPGPAGPTGAPG
PAGAVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNIGLPGPPGPSGKEGGKGPRG
ETGPAGRPGEPGPAGPPGPPGEKGSPGADGPIGAPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSPGERGPPGPMGPPGLAGPPGEAGREGAPGAEGAPGRDGAAG
PKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPQGPAGPAGPAGARGPAGPQG
PRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAAG
KDGLNGLPGPIGPPGPRGRTGDVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHD
GGRYYRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKS
GEYWIDPNQGCNLDAIKVYCNMETGETCVYPTQATIAQKNWYLSKNPKEKKHIWFGETMS
DGFQFEYGGEGSNPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDRDTGNLKKALLLQ
GANEIEIRAEGNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPIIDLAPMDVGAPD
QEFGIDIGPVCFL
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattctcggttactgctgttgatagcagcgactgtactactcacc
cgcgggcaaggagaagaagacattcaaactggaagctgcatacaggatgggctaacgtac
aacgataaggatgtgtggaaacccgaaccctgccagatctgcgtctgcgacagcggcaac
atcctctgcgatgaggtgatctgcgaggacacctccgactgccccaacgccgagatcccc
ttcggagagtgctgccccatctgtcccgacaccgacgcctcccctgtctacccagaaagc
gctggagtagagggtcctaagggagacaccggccccaaaggagacaggggactccccggc
ccccctggcagagatggcatccctggacagcctggcctcccgggacccccaggccctcca
ggtcctccaggcctcggcggaaacttcgctcctcaaatgtcttatggctacgacgagaaa
gccggtggcatggccgtgcccggccccatgggtccagctggtccccgcggtctccccggt
cctcctggtgctcctggtcctcaaggtttccaaggtccccctggtgaacccggagagcct
ggtgcttctggtcccatgggtccccgtggtccagccggcccccctggcaagaacggagat
gacggtgaagctggaaagcccggccgtcccggagagcgcggtccccccggtccccagggt
gcacgtggtctcccaggaaccgccggtctgccgggcatgaagggtcacagaggcttcagt
ggtctggatggtgccaagggtgagcccggtcctgctggccccaagggtgagcctggcagc
cccggagagaacggtgctcctgggcagatgggtcctcgtgggcttcccggcgagagaggc
cgtcccggtccatctggccccgctggtgctcgtggtaacgacggtgctcctggtgctgct
ggtcctcccggtccaactggccctgctggtccccccggcttccccggtgctgctggtgct
aagggtgaaactggtccccagggagctcgtggcagtgaaggtccccaaggtgcccgcggt
gagcccggtccccccggccctgctggcgctgctggtcctgctggcaaccccggtgctgat
ggtcaacctggtgccaagggcgcaaccggtgctcctggcattgctggcgctcccggcttc
cccggtgcccgcggtccctccggaccccagggtcccagcggtgcccccggtcccaagggt
aacagcggtgaacccggtgctccaggcaacaagggagacactggtgccaaaggcgaaccc
ggtcccgctggtgtccaaggcccccccggcccagctggcgaagaaggcaagagaggagct
cgtggtgagcccggccccgctgggcttcccggccccgccggcgaacgtggtgctcccggc
agccgcggtttccctggtgctgatggcattgccggtcccaagggtccccccggcgagcgc
ggctcccccggccccgctggccccaaaggatctcctggtgaagctggacgccccggggaa
cccggcctccctggtgccaagggtctgactggaagccctgggagccccggtcccgacggc
aagactggcccccccggtcccgctggtcaagacggccgccccggcccccccggccccccc
ggagctagaggtcaagccggcgtgatgggtttccccggtcccaaaggtgctgcgggtgag
cccggcaaacccggcgagagaggtgctcctggtccccccggcgccgttggtgctgctggc
aaagatggtgaagctggtgcccaaggtcctcccggccctaccggtcccgctggagaaaga
ggtgaacaaggtcccgctggtgctcctggcttccagggtctgccgggccccgctggtccc
cccggtgaggctggcaagcccggtgagcagggtgtccccggagacgccggtgcccccggt
cccgccggtgccaggggtgagagaggtttccccggtgaacgcggcgtccaaggccccccc
ggtccccaaggtcctcgtggtgctaacggtgctcccggtaacgatggtgctaagggcgat
gctggtgctcccggtgcccccgggaaccaaggcccccccggtctgcagggtatgcccgga
gagcgtggtgctgccggcctgccaggcgccaagggtgacagaggcgaccccggtcccaaa
ggtgctgacggcgctcctggcaaagacggtctccgaggtctgactggccccatcggcccc
cccggccccgctggtgctcctggtgacaagggtgaagctggtccccccggtcctgctggt
cccactggtgcccgtggtgctcccggcgaccgcggcgagcccggccctcccggtcctgct
ggatttgctggccccccaggtgccgatggccagcctggtgctaaaggtgaaactggtgat
gctggagccaagggtgatgccggtccccccggccctgctggccccactggtgctcctggc
cctgccggtgctgttggtgctcctggtcccaaaggtgctcgcggtagcgctggaccccct
ggtgctactggtttccctggtgctgctggaagagttggtccccccggcccctccgggaac
atcggtctccccggcccccccggccccagcgggaaggaaggtggcaaaggaccccgcggt
gaaaccggccccgctggccgccccggtgagcctggccctgctggcccccccggccccccc
ggcgagaagggttctcctggcgctgacggccccatcggcgctcccggcacccccggaccc
caaggtatcgctggccagcgcggtgtcgtcggcctccccggacagagaggcgagagaggc
tttcccggtctgcctggcccctctggtgaacccggcaagcaaggtccctccggttcccct
ggcgagcgcggtcctcccggccccatgggcccccccggcttggctggaccccccggtgaa
gctggacgtgagggtgctcccggtgctgaaggtgcccccggtcgtgatggtgctgctggt
cccaagggtgaccgtggtgagactggccctgctggcccccctggtgctcccggtgccccc
ggtgcccccggccccgtcggtcctgctggcaagagtggagatcgcggtgagaccggtccc
caaggtcccgctggccccgctggtcctgctggtgctcgtggtcctgctggtccacaaggt
ccccgtggtgacaaaggtgaaactggtgaacagggtgacagaggcatgaagggtcacaga
ggcttctccggtctccagggcccacctggtcctcctggctctcctggtgaacaaggtcct
tctggtgcttctggtcccgccggtccaagaggtcctcccggctccgctggtgctgccggc
aaagatggtctcaacgggctgcccggccccatcggtccccccggcccccgcggtcgcacc
ggcgacgtcggccccgtcggtccccctggcccacccggcccccccggtcctcccggcccc
cccagcggcggcttcgacttcagcttcctgccccagccgccccaggagaaggcccacgac
ggcggacgctactaccgagccgacgatgccaacgtgatgcgcgaccgggacctggaggtt
gacaccaccctcaagagcctgagccaacagatcgagaacatccgcagccccgagggcacc
cgcaaaaaccctgcccgtacctgccgcgacctgaagatgtgccacggcgactggaagagc
ggcgaatactggatcgaccccaaccaaggctgcaacctggatgccatcaaggtctactgt
aacatggagacgggcgagacgtgcgtctacccaacccaggccaccatcgcccagaagaac
tggtacctcagcaagaaccccaaggagaagaagcacatctggttcggcgagacgatgagc
gacggcttccagttcgagtacggcggtgagggctccaacccagccgacgtcgccatccag
ctgaccttcctccgcctgatgtccaccgaggcctcccagaacatcacctaccactgcaag
aacagcgtcgcctacatggaccgggacaccggcaacctgaagaaggcccttctcctccaa
ggcgccaacgagatcgagatcagggctgaaggcaacagccgcttcacctacggcgtcacc
gaggacggctgcacgagtcacaccggcgcttggggcaagacagtcatcgagtacaagacg
acaaagacctctcgcctgcctatcatcgatttggctcccatggacgttggcgctccagac
caggaattcggcatcgacatcggccccgtctgcttcttgtaa
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