Aquila chrysaetos chrysaetos (golden eagle): 115346761
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Entry
115346761 CDS
T08023
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X13
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
achc
Aquila chrysaetos chrysaetos (golden eagle)
Pathway
achc03008
Ribosome biogenesis in eukaryotes
achc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115346761 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
115346761 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achc03019
]
115346761 (XRN1)
03009 Ribosome biogenesis [BR:
achc03009
]
115346761 (XRN1)
03016 Transfer RNA biogenesis [BR:
achc03016
]
115346761 (XRN1)
03036 Chromosome and associated proteins [BR:
achc03036
]
115346761 (XRN1)
Messenger RNA biogenesis [BR:
achc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115346761 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
115346761 (XRN1)
Ribosome biogenesis [BR:
achc03009
]
Eukaryotic type
Pre-60S particles
RNases
115346761 (XRN1)
Transfer RNA biogenesis [BR:
achc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
115346761 (XRN1)
Chromosome and associated proteins [BR:
achc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115346761 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
115346761
NCBI-ProteinID:
XP_029882992
Ensembl:
ENSACCG00020004482
LinkDB
All DBs
Position
10:17989752..18031389
Genome browser
AA seq
1771 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTVYLSGHETPGEGEHK
IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTSHEAHFALLREEVRFGGKKSQRACA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTRLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARKNKQKKQKAQENSMCLAALEKNEGEVTPKTVLEDEPED
DDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYYP
YHYAPYLSDIHNISELKIKFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMISQDSPII
EYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKYLKEEEKRRNTHSACLMYW
YDKDAEFQYMSPWPEKFPAVERCHTRYKTIPLDAWHVEITHNKITKINKSALYFCGFPTL
KHIKHKFYLRKSGVQVFQQSSHGENMMLEIIADENSKEQMVENVASSVLGKRVFVNWPHL
EEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAYVGDKEQSMWLKEVQGISEHYQ
RRKGIIIHETSIVVYAQLLTGNRYQLNQNGEVYLEKQWSKQALPFVYQTVVKDIKAFDCR
FSNIRTLDDLFPPGSTAFMLGSPYYGCMGEVQDSRDVITEGRIRVVFNIPCEPQLDPLIQ
NQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNKK
NEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFNYIAKNSQEDIFYEDDIWPGEDEN
GAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTVKP
HLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGASRETDVLFEV
LFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSRSEMGNQKLMAIVKPQPAVNNYNSYA
SDLSSVCPQKVHLGGLNHSPRSLFVPTQQLNGRQHYNLRAENQGNSNSPQKGSFLSGNQK
NKAQSKQGDEFCSIWQSLQNSGKSHHIQQNMHEKGAVLPQEIKLGTGNQFYKPGFNDSSF
KGQQRKQEPYKKFKEDSKVTRGESQPHNKISNKQNFAGVNKYNVKLLKRNESPNMPVVQK
AAVDGTSTGGKKDNELEGLLASLKISKENEVQTYSKEARATNEEHLSPQSFAMKGTQMLK
EILKIDGSDLETRNEVKSQVNDVPAPPSRQDCHGAALQYRQTKRMAAYMNKPHSTGGPQN
TAALETGGHPFTCPQPALSTVSELSRICSLVGMSQPDFSFLKTPQTMTVCHIKLSNGLLV
HGPQCHSEAEAKEKAALFALQRLSSIGVNFPLPPPPPPPVFPNYQPLGVPVPPGSIPPVF
AQPPANIMPPSSHMFGPVSWGTPVPKHYYPGSYPGNVSLAGTIPVGSHNQFIPLQVTKKR
AASKKNFELKEFQSSPQAAPLKNEQPVSSDHIQQDSSSASLKSPQAAQSTVSFQDNVATP
SVPHNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtggatctcggagcggtacccctgcctcagccaggtg
ctgaaggagcatcagattccagaatttgacaacttatacctggacatgaatggcattata
catcagtgttcacatccaaatgatgacgatgttcacttcagaatctcagaagataagatt
tttgctgatatttttcactatttggaagtgctgtttcgcattattaaaccaaggaaggtt
ttcttcatggcagttgatggagtagctccaagagcaaaaatgaatcagcagcgtgggaga
cgttttagatcagcaaaagaggcagaggacaaaataaaaaaggctttagaaaagggagaa
actctccctacagaagccagatttgactccaactgtattacaccaggaactgaattcatg
gccagactgcatgagcatcttaaatattttgtaaatatgaagatttccacggacaagtcc
tggcaaggagtaacagtctacttatcaggccatgagactccaggggaaggtgagcataaa
attatggagttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaagacac
tgtctctatggcttagatgctgacttgattatgctgggattaacaagtcatgaggcacac
tttgcgctcttaagagaagaagtcagatttggtggtaaaaaatctcaaagagcatgtgca
ccagaggaaaccacgtttcatttactgcacttatcactgatgagagaatatattgattat
gaattttcgccagtaaaagacaagatttcctttgaatatgatattgaaaggataatagat
gattggatcttaatgggtttccttgtaggaaatgattttattcctcatctacctcattta
cacatcaatcatgatgcactgccgctactttatagaacgtacatggctatcttgccagag
ctgggaggttacataaatgaaaatgggcatctgaatttaaaacgctttgagaaatatctc
acaagactgtcagattttgatcgtgaacacttcagtgaagtctttgtagacctaaaatgg
tttgaaagtaaagtaggcaataaatacctcaatgaggcagctggtattgcagcagaggaa
gccagaaaaaataaacaaaagaaacaaaaggctcaggaaaattcaatgtgtttggctgct
ttagagaaaaacgaaggtgaagtgacccctaaaactgtgttggaagatgaaccagaagat
gatgatctctttgaaactgaatttaggcaatacaaaagaacttactacatgactaaaatg
ggtgtagaagtagtttctgatgacttcttggccgatcaagctgaatgttatgttcaggca
atacaatggattttgcattattattaccacggagttcaatcatggagctggtattatcct
tatcattatgcaccttatctgtcagatattcataacatcagtgaactcaaaatcaaattt
gaactgggaaaacctttcatgccatttgaacagcttcttgctgtacttccagcagctagc
aaagatctcctacctaaatgctaccagcatttgatgattagtcaagactctcctattata
gaatattatccaccggattttaaaactgacttaaatggaaaacagcaagaatgggaagct
gtagtattaatcccatttattgatgagaaacgactgctgcaggccatggaatcctgtaat
aagtacctaaaagaagaggagaaacgaagaaatactcacagtgcttgcttaatgtactgg
tatgacaaagatgcagagttccagtatatgtcaccatggccagagaaattccctgcagta
gaaagatgtcatacaaggtataaaacaatacctttggatgcttggcacgtagaaataacc
cacaataagataactaaaatcaacaagagtgcattatatttttgtggatttcctacttta
aagcacattaaacataagttctatcttagaaaaagtggcgtacaggtgtttcagcaaagc
agccatggagagaacatgatgttagaaatcatagctgatgagaactctaaagaacagatg
gtagaaaatgttgccagttcggtacttgggaagcgtgtttttgttaactggccacacctt
gaagaagccagagttgttgctgtgtcagatggagaaactaagttttatttggaagaacca
catggcacccagaagctttacatgggaaatgcagtgcccccaactaaagtggcgtatgtt
ggagataaggaacaaagcatgtggttaaaagaagttcaaggcatttcagagcactaccag
agaaggaaaggaataattattcatgaaacatcaatagttgtatatgctcagttactcact
ggtaatagatatcaactaaaccaaaacggagaagtttatttggagaagcagtggtcaaaa
caagctcttccttttgtttaccaaactgttgtcaaggatatcaaagcctttgactgtcgt
ttttcaaacatcagaactttggatgacttgtttcctcctggaagtacagcctttatgctg
ggatctccttactatggctgcatgggagaagttcaagattcacgcgatgtgatcacagaa
ggtagaattcgtgtagttttcaatattccatgtgaaccccagcttgatcctttaatacag
aaccagcataaatattctgtgaaatacaatcctgcatacattttggccagccgtcttgga
gtaagtggatatcttgtctccagatttacagggagtatcttcattggaagaggatcaaag
aaaaatcctcatggagatcacaaagcaaatgtggggctaaacctgaagttcaataagaaa
aatgaagaagttcctggctatactaagaaagttggaaatgaatggatgtattcttctgca
gtggaacaactacttgctgaatatttagaaagggtccctgaactatttaattatatagcc
aagaatagccaggaagatatcttctatgaagatgacatttggcctggagaggatgagaat
ggagctgagaaagttcaagaaattgttgcctggttaaaggcacatcctgtgtctgctttg
tctcgctcatcttgtgacttgcaaattttggatgcagccattgttgagaaaattgaagaa
gaaatagagaaatgcaagcagagaaagagcaacaagaaggtgcgagtaactgtgaaaccc
catttgctgtacagaccattagaacaacagaacggggttgtgccagatcgagatgcagag
tataggctgtttgaccgtgttgtcaatgtgagagagaacttttcagttccagttggtctt
cgaggtaccattataggaattaaaggagccagtagagaaacagatgtgctcttcgaagtt
ttgtttgatgaagaattccttggaggcctaactataaggtgctcacctgccagaggttat
cgtctgccatcaagtgccttaattaacctgtctcatggtagtcggtcagaaatgggaaat
caaaaactgatggccatagttaaacctcagccagctgttaataactacaattcatatgca
tctgacctgtcatctgtatgcccacaaaaggtgcatctgggaggcctcaaccattctcct
cgctcgctttttgttcctactcaacaactgaatggaagacagcattacaatctcagggct
gaaaatcagggtaactctaactcaccccagaaaggatcatttttgagtggcaatcagaaa
aataaagcacagagtaagcaaggtgatgaattctgcagcatatggcaatcattgcagaat
tctgggaagtctcaccacattcagcaaaacatgcatgagaagggtgcagttctacctcag
gaaatcaagctgggaactgggaatcagttctataagccaggattcaatgacagcagcttt
aaaggtcagcaaagaaaacaggagccatataaaaaatttaaagaagattccaaagttaca
agaggtgaaagtcagccacataataaaatatcaaacaaacagaattttgcaggtgtgaat
aagtacaatgtcaaacttttgaagaggaatgaaagtcccaacatgcctgtagttcagaag
gctgcagttgatggcacttctacaggtggaaagaaggacaatgaacttgaaggccttcta
gcttctttgaaaatttccaaagaaaacgaagtgcagacttattccaaggaagcaagagct
acaaatgaagaacatctgtcaccacaatcatttgctatgaaaggaacacagatgctcaaa
gagattttgaagatagatggctctgacctggaaacaaggaatgaagtgaaatcccaagtt
aatgatgttcctgctccccctagtagacaggattgccatggagctgccttgcaatataga
caaacaaaaagaatggctgcttatatgaacaagcctcatagcactggaggtcctcagaac
acagcagcactggaaactggaggtcaccctttcacttgcccgcagcctgcactgtctact
gtttctgaactttctcgtatttgttctcttgttggaatgtcgcaaccagatttctctttc
ctaaaaacaccacagaccatgacagtttgtcacataaaattatcaaatggtttgttggtt
catggaccgcagtgtcattctgaagctgaagcaaaggagaaagctgcgctttttgcttta
cagcgtttgagttctataggagtaaacttccctttgcctccacctccacctccaccagtg
tttccaaattatcaaccactgggagttcctgtgccacctggatctattcctccagtattt
gcacaaccccctgctaatataatgcctccatcatctcacatgtttggtccagtgtcctgg
ggaactccagtgcctaaacattattatcctggctcctatccaggaaatgtgtctcttgca
ggaactataccagttggttctcacaaccagtttatacctctgcaggtaactaaaaaaagg
gctgctagcaagaaaaactttgagctcaaggagtttcagagttcccctcaagctgcacca
ctaaagaatgaacagccagtgtcttctgaccacattcagcaagatagttcttcagcttct
ttaaaatctcctcaagctgctcaatccactgtttcatttcaagacaatgtggctactcca
agcgttcctcataacaaatcaacaccaaacacttccagcaagcgaaagccaagaaagctg
gctgtcaattttggcgcaccaaaatcttcagaataa
DBGET
integrated database retrieval system
