Aquila chrysaetos chrysaetos (golden eagle): 115352721
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Entry
115352721 CDS
T08023
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
achc
Aquila chrysaetos chrysaetos (golden eagle)
Brite
KEGG Orthology (KO) [BR:
achc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
achc03016
]
115352721 (RTCB)
Enzymes [BR:
achc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
115352721 (RTCB)
Transfer RNA biogenesis [BR:
achc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115352721 (RTCB)
Prokaryotic type
tRNA splicing ligases
115352721 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
115352721
NCBI-ProteinID:
XP_029897164
Ensembl:
ENSACCG00020006741
UniProt:
A0A663EC55
LinkDB
All DBs
Position
17:4706891..4719783
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
TEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgataagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcacgtggagggcgttttctacgtgaacgac
cccctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggggcaggt
ggttttttgcctgcaatgaaacagattgggaatgtggctgcattacccggcattgttcat
agatcaataggccttccagatgtccattctggctatgggtttgccattggcaacatggcc
gcctttgatatgaatgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gaacagctcgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctt
caggctgaccccaacaaggtttcctcaagagcaaagaagaggggcctgcctcagctgggg
accctgggagcgggaaatcattacgccgagatccaggtcgtggatgacatttacaacgaa
tatgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggtctgggccaccaggttgccacagatgcgttggtggctatggaaaaagct
atgaagcgggacaaaatcatagtgaatgatcgccagctggcatgtgccaggattgcctcc
acagagggacaggattacttgaagggaatggcagctgctggaaactatgcatgggtcaac
cgctcttctatgacttttctaacaagacaggcctttgccaaagtcttcaacacaacccca
gatgacctcgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
catgtagtggatggaaaggagcggactctgctggtgcacagaaaaggatcaaccagggcc
ttccctcctcaccatcctcttattgctgtcgattatcaactgactggacagcctgttttg
atcggcgggactatgggcacctgtagctatgttcttactggcacagagcaaggcatgacc
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccattcgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttataagaatgtgacagat
gtggttaacacctgccatgcagctggtatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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