Aspergillus chevalieri: ACHE_11780A
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Entry
ACHE_11780A CDS
T08080
Symbol
YTH1
Name
(RefSeq) RNA-binding component of cleavage and polyadenylation factor
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ache
Aspergillus chevalieri
Pathway
ache03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ache00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
ACHE_11780A (YTH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ache03021
]
ACHE_11780A (YTH1)
03019 Messenger RNA biogenesis [BR:
ache03019
]
ACHE_11780A (YTH1)
Transcription machinery [BR:
ache03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
ACHE_11780A (YTH1)
Messenger RNA biogenesis [BR:
ache03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
ACHE_11780A (YTH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
66978737
NCBI-ProteinID:
XP_043132900
UniProt:
A0A7R7ZJI3
LinkDB
All DBs
Position
1:complement(5163606..5164370)
Genome browser
AA seq
254 aa
AA seq
DB search
MATDVSYAASSILSTDNTRDPEYNDFSFTPFLRNSFGFGLASDVPVCKAYSEGHCPLGPA
CPDRHPTPTRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKGLKCEYLHEYNLRRMPEC
QSFTRSGYCPNGDDCLYQHVREHARLPPCENYDQGFCELGPLCAKRHVRRRLCQYYLAGF
CPEGRACPDGHPRWNEHLPRPSLRVEKTEEELERERSLIREEQEREREREREWRNERGRG
GGFMRGRFRGRGRG
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagacgttagttatgctgcctccagcatcctgtcgacggacaatacccgcgac
cccgaatataacgatttctccttcaccccgtttctccggaatagtttcggcttcggtctc
gccagcgacgtccctgtctgcaaagcctacagtgaaggccactgtcctctaggacctgca
tgtccagatcgccatcccactccaacacgcgttaccacttccacgactactgcgtcgggt
cttgccccgtcgactacacacggctccctcgtctgcaagcatttcctcaaaggactctgc
aagaaggggttgaaatgcgaatacctacacgaatacaacctccggcggatgccggagtgc
caatcattcacacgatctggatactgccccaacggcgatgattgtctataccaacatgta
cgggaacacgctcgcctcccgccgtgcgagaactacgaccagggattctgcgagttgggt
ccgttgtgcgcgaaacgccatgtcagacgacgtctgtgtcagtattatcttgccgggttc
tgcccggagggtagagcgtgtcccgatggccatcctcgttggaacgaacatttgccaaga
ccatcattgcgggtggagaagacggaggaggagctggagcgggaacggtcgttgattcgg
gaggagcaggaacgcgaaagggaaagagagcgtgagtggaggaatgaacggggtcgggga
ggtgggtttatgcgtggtcggtttcgcggtcgggggcgcggctga
DBGET
integrated database retrieval system
