Achromobacter sp. HNDS-1: ABFG95_14575
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Entry
ABFG95_14575 CDS
T10763
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
achh Achromobacter sp. HNDS-1
Pathway
achh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
achh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABFG95_14575 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achh03021
]
ABFG95_14575 (rpoC)
03400 DNA repair and recombination proteins [BR:
achh03400
]
ABFG95_14575 (rpoC)
Enzymes [BR:
achh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABFG95_14575 (rpoC)
Transcription machinery [BR:
achh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABFG95_14575 (rpoC)
DNA repair and recombination proteins [BR:
achh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABFG95_14575 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
XBP01656
UniProt:
A0AAU7LIB9
LinkDB
All DBs
Position
complement(3127232..3131476)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFTDVAEVQRAYDNG
EVELQSRITVRLKEHERDENGEWQPVIRRHETTVGRALLSEILPKGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMGDMLIPSAKEGILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVINRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTSQGYNMKALVEGGEVIEPLRDRIL
GRVAAIDIVNPDTQETAITAGTLLDEDMVDMIDRIGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGTPVNQGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSSGVVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLVGDGEAVKAGARLAT
WDPLTRPIVSEYGGAVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNENGEDVKIAGTDHSVNISFPVGALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTEFIPGEQVERSELLNENDRVNAEDKRPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHHARKDKEALEAAERE
AARQLANPFEDSPVTVGSDADVPSSDLGSEDAAE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgacctctttaagcaagtctcgcaagacgagcaattcgatgccatc
aagatcggcatcgcctcgcccgagaagatccgttcgtggtcctacggcgaagttcgcaag
cccgagaccatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgctccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagttaccgttgccaaggttcgccgtgaa
cgcatgggccacatcgagctggccagccccgtcgcgcacatctggttcctgaagagcctg
ccgtcacgtctgggcatggtgctcgacatgaccctgcgcgacatcgaacgcgtcctgtac
ttcgaagcctggtgcgtgatcgaacccggcatgacgccgctcaagcgcggccagatcatg
tcggacgacgatttcctggccaagaccgaggaatacggcgacgacttccgtgccctgatg
ggcgccgaagccgtgcgcgaactgctgcgcaccatcgacatcgaccgcgaagtggaaacg
ctgcgcggcgaactgaaggccaccagctcggaagccaagatcaagaagatctccaagcgc
ctgaaggtgctggaaggcttccagaagtccggcatcaaggccgagtggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cgcctgctggagctgaaggcccctgaaatcatcctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctggacaacggtcgccgcggcaaggccatgaccggcgccaac
aagcgccagctcaagtccctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggccctggaactgttcaagccgttc
atcttcaatcgcctggagatgatgggcctggccacgaccatcaaggccgccaagaagctg
gtggaaagccaggaaccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgtgcgcccacgctgcaccgtttgggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgccgac
tttgacggtgaccagatggccgtccacgtgccgctgtcgctggaagcccagctggaagcg
cgcacgctgatgctggcttcgaacaacgtgctgttcccggccaacggcgaaccgtcgatc
gtgccgtcccaggacatcgtgctgggtctgtactacacgacgcgcgagcgcatcaacggc
aagggcgaaggcattttcttcaccgacgtcgctgaagtgcaacgcgcctacgacaacggc
gaagtggagctgcaaagccgcatcaccgtgcgcctgaaggaacacgagcgtgacgagaat
ggcgaatggcagccggtgatccgccgccacgaaaccaccgtcggccgcgcgctgctgtcc
gagatcctgcccaagggcctgcccttcaccgtgctgaacaaggcgctgaagaagaaggaa
atctcgcgcctgatcaaccagtcgttccgccgttgcggcctgcgcgacacggtgatcttc
gccgacaagctgatgcagtcgggcttccgcctggccacccgcggcggtatctcgatcgcc
atgggcgacatgctgatcccgtcggccaaggaaggcatcctggccgaagccagccgtgaa
gtgaaggaaatcgacaagcagtactcgtcgggtctggtcacgtcccaggaacgctacaac
aacgtggtggacatctggggcaaggccggcgacaaggtcggcaaggcgatgatggagcaa
ctggccaccgaacccgtgatcaaccgtcacggcgaggaagtgcgccaggagtcgttcaac
tccatctacatgatggctgactcgggcgcccgcggttcggccgcccagatccgccagctg
gccggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgcccattacc
gcgaacttccgtgaaggcctgaacgtgcttcagtacttcatctcgactcacggcgcgcgt
aagggtctggccgacacggcactgaagaccgcgaactcgggttacctgacccgtcgtctg
gtcgacgtgacgcaggacctggtgatcaccgaggacgattgcggcacctcgcagggctac
aacatgaaggccctggtggaaggcggtgaagtcatcgagccgctgcgcgaccgcatcctg
ggccgcgtggccgccatcgacatcgtcaacccggacacgcaggaaacggcgatcaccgcc
ggcaccctgctggacgaagacatggtcgacatgatcgaccgcatcggcgtggacgaagtc
aaggtccgcacgccgctgacgtgcgaaacgcgccatggcctctgcgcgcactgctatggc
cgtgacctcggccgcggcacgccggtcaaccagggcgaagcggttggcgtcgtcgccgcc
cagtccatcggtgaaccgggcacgcagctgacgatgcgtacgttccacatcggtggcgcg
gcgtcgcgttcggccctggccagcgcggtggaaaccaagtccagcggcgtggtcggcttt
gccagcaccatgcgctacgtcaccaacgccaagggcgaacgcgtcgcgatttcgcgctcg
ggcgaactggcgatcttcgacgacaacggccgcgaacgcgaacgccacaagatcccgtac
ggcgcgaccgtgctggtgggcgatggcgaggccgtgaaggccggcgcgcgcctggcgacg
tgggatccgctgacccgtccgatcgtgtcggaatacggtggcgccgtccgcttcgagaac
atcgaggaaggcgtgaccgtggccaagcaggtggacgaagtcaccggcctgtcgacgctc
gtcgtcatcacgcccaagacccgtggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgagaacggcgaagacgtcaagatcgctggcaccgatcactcggtgaacatctcg
ttcccggtcggcgcgctgatcacggtgcgtgacggccagcaggttgccgtgggtgaagtc
ctggcgcgtattccgcaggaatcgcaaaagacccgcgacattaccggcggtctgccgcgc
gtggccgagctgttcgaagcccgttcgcccaaggatgccggcatgctcgccgacgtcacc
ggcacggtctcgttcggcaaggacaccaagggcaagcagcgcctggtcatcaccgacctg
gaaggcgtcagccacgagttcctgattccgaaggaaaagcaggtgctggtgcacgacggc
caggtggtgaacaagggcgaaatgatcgtggacggcccggccgatccccacgacatcctg
cgcctgcagggcatcgagaagctggcgacctacatcgtcgacgaagtgcaggacgtgtac
cgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgattgttcgtcagatgctg
cgccgtgtgaacatcgtcgatgcgggcgataccgagttcatcccgggcgagcaggtcgag
cgctccgagctgttgaacgagaacgaccgcgtcaacgctgaagacaagcgtccggccacg
tacgaaaacgtgctgctgggtatcaccaaggcctcgctgtcgaccgactcgttcatctcg
gccgcctcgttccaggaaaccacgcgtgtcctgaccgaagccgccatcatgggcaagcgc
gacgacctgcgtggcctgaaggaaaacgtcatcgtcggccgcctgatcccggccggtacc
ggcctggcgtaccaccatgcccgcaaggacaaggaagccctggaggccgcggaacgcgaa
gccgcccgccagctggccaacccgttcgaagactcgccggtcacggtgggctcggacgcc
gatgtcccgtcgtccgacctgggcagcgaggacgccgccgaataa
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