Achromobacter sp. HNDS-1: ABFG95_20540
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Entry
ABFG95_20540 CDS
T10763
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
achh Achromobacter sp. HNDS-1
Pathway
achh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABFG95_20540 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achh03019
]
ABFG95_20540 (pnp)
03016 Transfer RNA biogenesis [BR:
achh03016
]
ABFG95_20540 (pnp)
Enzymes [BR:
achh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ABFG95_20540 (pnp)
Messenger RNA biogenesis [BR:
achh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABFG95_20540 (pnp)
Transfer RNA biogenesis [BR:
achh03016
]
Prokaryotic type
tRNA degradation factors
ABFG95_20540 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
OB_PDCD11
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_KhpA-B
KH_SLS1_2
S1_TP0910
KH_NusA_2nd
KH_PNO1_2nd
DUF5813
Motif
Other DBs
NCBI-ProteinID:
XBO97248
UniProt:
A0AAU7L5U8
LinkDB
All DBs
Position
4428727..4430883
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AA seq
718 aa
AA seq
DB search
MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSV
NPEIDPDIPAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVA
GTENAVLMVESEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQPPAKDE
ALIAAVTSAAQEGLNAAYQIREKQARTTKLREVYADVSAKLNAAAAEKGEPAPDAVTVDN
ILFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT
LGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALIPLL
PAPEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKF
AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILG
KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI
VIASVDEAQAKEAQRRIVELTADVEVGQVYEGSVLRLLDFGAIVQVLPGRDGLLHISEIA
NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAIGGIEQQQPAAEAAPQAEPQAE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaagtgactaaatcgttccagtacggccagcatacggtcgtcctggaaacc
ggcgaaattgctcgccaggcctccggcgccgtggtggtgtcgatcgaggacaccgtcgtc
ctggccactgtcgtggcctccaagaaggccaagccgggccagacgttcttcccgctgacc
gtcgactacatcgaaaagacctacgccgccggtcgcatcccgggtggtttcttcaagcgc
gaaggcaagccgtccgagaaggaaacgctgacctcgcgcctgatcgaccgtcccctgcgt
ccgctgttccccgaagacttctacaacgaagtccaggtggtcatccacacgctgtcggtc
aatcctgaaatcgaccccgacatccccgcgatgatcggcgcctcggccgcgctggccatc
tccggcatccccttcaatggcccgatcggcgccgcccgcgtgggctacatcgatggccag
tacgccatcaacccgaccgcatcgcagctgaagtcctcgaagctcgacctggtggtcgcc
ggcaccgaaaacgccgtgctgatggtggaatcggaagctgaccagctgtccgaggaaatc
atgctgggcggcgtggtctacggccacgagcagatgcaggccgtcatcaacgccatccac
gaactggtcaaggacgccggcaagcccgattgggactggcagccgcccgccaaggacgag
gccctgatcgccgccgtcacgtcggccgcccaggaaggcctgaacgccgcctaccagatc
cgcgaaaagcaggcccgcaccaccaagctgcgtgaagtctacgccgacgtgtcggccaag
ctgaacgccgccgccgccgagaagggcgagccggcgccggacgccgtcaccgtcgacaac
atcctgttctcgctggaatcggccatcgtccgtggccagatcctgaacggcgaaccgcgt
atcgacggtcgcgacacccgcaccgtgcgtcccatcagcgtgcgcctgggcgtgctgccg
cgcgcgcacggcagcgccctgttcacccgtggtgaaacccaggcgctggtcgtggccacg
ctgggcaccaagcaggacgagcagatcatcgacgcgctcatgggcgagtaccgcgatcgc
ttcatgctgcactacaacatgcctccgttcgccaccggcgaaaccggtcgcatcggtgtg
cccaagcgccgcgaaatcggccacggccgcctggccaagcgcgcgctgattccgctgctg
ccggccccggaagacttccagtacaccatccgcatcgtgtcggaaatcaccgagtccaac
ggctcgtcgtcgatggcttcggtctgcggcggctcgctggccatgatggacgccggcgtg
ccggtcaaggatcacgtggccggcgtggccatgggcctgatcctggacggcggcaagttc
gccgtgctgaccgacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtc
gcgggcaccgaaaacggcgtcaccgcgctgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaagtggcgctggcgcaagcccgcgaaggccgcctgcacatcctgggc
aagatgaaggaagcgctggacggttcgcgtggcgagctgtcggctttcgccccgcgcatg
ctgaccatcaagatcaaccccgagaagatccgtgacgtgatcggcaagggcggcgccacc
atccgcgcgctgaccgaggaaaccggcacccagatcgacatctccgacgacggcacgatc
gtgatcgccagcgtcgacgaagcgcaggccaaggaagcccagcgccgcatcgtcgagctg
accgccgacgtcgaagtgggccaggtctacgagggctcggtgctgcgcctgctggacttc
ggcgccatcgtgcaagtgctgccgggccgcgacggcctgctgcacatctcggaaatcgcc
aactaccgcatcgccaacatcaacgatgtgctgaaggtcggccagcaagtccgcgtcaag
gtcatcgaggccgacgacaagggccgcctgcgcctgtccatcaaggccatcggtggcatc
gagcagcagcagcccgccgccgaagccgccccgcaagcggaaccgcaagccgagtaa
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