Achromobacter sp. HNDS-1: ABFG95_21075
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Entry
ABFG95_21075 CDS
T10763
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
achh Achromobacter sp. HNDS-1
Pathway
achh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
achh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABFG95_21075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
achh03400
]
ABFG95_21075 (mfd)
Enzymes [BR:
achh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABFG95_21075 (mfd)
DNA repair and recombination proteins [BR:
achh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABFG95_21075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
SNF2-rel_dom
UB2H
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XBO97349
UniProt:
A0AAU7L666
LinkDB
All DBs
Position
complement(4559341..4562805)
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AA seq
1154 aa
AA seq
DB search
MPAPTSSATAAPPVPATAPTLAALKPGTRYAQPRPPGSGDAWLLADLARQAGAPLVVLTA
EPLEAQRLAEEIALFAPGLRVRQLPDWETLPYDAFSPHQDLISERLHTLHSLMMKTVDVL
TVPVTTALYRLAPPSFLAAYTFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPGEFCLRG
GLIDLFPMGSALPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMDEDSRNR
FRARFREVFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFDETATLFDYLADNAITVTVGD
IDDAMMRFHQDTGSRYGFLKSDRERPVLPPSALFLDEQTLYARLKDFRRLALAAGQPHPD
FRAAPDVSVARRAEDPIAKLRTHVGKPQGRVLLCADSAGRRETLVQMLNEFGVTPDAQPD
SIEAFLASDAHFGIVAAPLATGFELPQANLAFLTENDLYPGLASTGRRGKRDQERASNVE
AMVRDLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYANGSTLYVPVSQLHV
IARYSGADPEAAPLHQLGSGQWDKARRKAAKQVRDTAAELLALYAQRAAREGFAFNLPLN
DYQAFAEGFGFEETADQAAAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVAN
GKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVSAAIEGINDGRVDIVI
GTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLE
GIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETIHNRRAR
LEELVPEARIAVAHGQMPERDLEQVMKGFYQQRYNVLLCTTIIETGIDVPSANTIVIHRA
DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSGFYLAMH
DLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRAGEEPDLDAPFNLACEVNLHA
PALLPSDYCADVHARLSVYKRLAHAADEDDLIQIQEELIDRFGKLPEAAQTLLTTHRLRL
AAQPLGIVKIDASETQALLQFGPKTSVDPAKIIELVQRQRHIKLAGQDKLRVEIKAAQIP
ARADAVRAVLRALK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctcccacctcctccgccacggcagcgccgcccgttcccgcgaccgcccccact
ctcgccgcgctcaagcccggcacgcgttatgcgcaaccgcgcccgcccggctcgggcgac
gcctggctgctggccgacctggcgcggcaggccggcgcgccgctggtggtgctgaccgcc
gagccgctggaagcgcagcgcctggccgaggaaatcgcgctgttcgcgcccggcctgcgc
gtgcgccagctgcccgactgggaaacgctgccgtacgacgccttctcgccgcaccaggat
ctgatctccgagcgcctgcacaccctgcactcgctgatgatgaagacggtggacgtgctg
acggtgccggtcaccacggcgctgtaccggctggcgccgccgtcgttcctggcggcctac
accttttccttcaagcagaaggacaagctcaacgaggcggcgctgcgcgcacagctgacg
ctggccaactacaaccacgtcacgcaggtcaccgcgcccggcgagttctgtctgcgcggc
ggcctgatcgacctgttcccgatgggatcggcgctgccctaccggctggacctgttcgac
gacgagatcgagaccattcgcagcttcgacgtcgacacccagcgcagcctgtatccggtg
cgcgaggttcagctactgccgggccgcgaattccccatggacgaggattcgcgtaatcgc
ttccgcgcgcgtttccgcgaagtgttcgaaggcgacccgtcgcgcgcccttccctacaag
gacatcggcaacggcatccccttcgccggggtcgagtactacctgccgctgttcttcgac
gagaccgcgacgctgttcgactacctggccgacaacgccatcaccgtcaccgtcggcgac
atcgacgacgccatgatgcgctttcaccaggacaccggcagccgctacggcttcctgaaa
agcgaccgcgagcgtccggtgctgccgccgtcggcgctgttcctggatgagcagacgctg
tacgcccgcctgaaggatttccgccgcctggcgctggccgcgggccagccccatcccgac
ttccgcgccgcgccagacgtgagcgtggcgcgccgcgccgaagacccgatcgccaagttg
cgcacgcatgtcggcaagccgcaaggccgtgtgctgctgtgcgccgactcggccggccgc
cgcgagacgctggtgcaaatgctgaacgagttcggcgtcacccccgacgcgcagccggac
agcatcgaagccttcctggcttcagacgcccacttcggcatcgtcgccgcgcccctggcc
accggcttcgagttgccgcaggccaacctggccttcctgaccgagaacgacctctatccg
gggctggccagcaccggccggcgcggcaagcgcgaccaggaacgcgccagcaacgtcgaa
gcgatggtgcgcgacctgtccgaactgcgcgccggcgaccccgtggtgcacgcgcagcac
ggcatcggccgctaccacggcctggtcaacatggacatgggcgaaggcgagatggagttc
ctgcatctcgaatacgccaatggcagcacgctgtatgtgccggtgtcgcaactgcacgtg
atcgcccgctacagcggcgccgatccggaagccgcgccgctgcaccagctcggctcgggc
cagtgggacaaggcgcgccgcaaggccgccaagcaggtgcgcgacaccgccgccgaactg
ctggcgctgtatgcccagcgcgccgcgcgcgagggcttcgccttcaacctgccgctcaac
gactaccaggccttcgccgagggcttcggtttcgaggaaaccgccgatcaggccgccgcc
atcgaggccgtgatcgccgacatgacctcgggccggccgatggaccgtctggtgtgcggc
gacgtcggcttcggcaagaccgaggtggcgctgcgcgccgcgttcctggccgtggccaac
ggcaagcaggtcgccctgctctgccccaccacgctgctggccgaacagcacgcccagacc
ttctccgaccgcttcgccgactggccggtgcgggtggtggaactgtcgcgtttccgctcg
gccaaggaagtgtccgcggccatcgagggcatcaacgacggccgcgtcgacatcgtcatc
ggcacccacaagatcctgtccaaggacgtgaagttcaagcgcctcgggctggtcatcatc
gatgaggaacaccgcttcggcgtgcgccagaaggaggcgctcaaggcgctgcgcgccgag
gtcgacgtgctgacccttaccgccacgccgatcccgcgcacgctcggcatgtcgctcgaa
ggcatccgcgatttctcggtcatcgccaccgcgccgcaaaagcgcctggcgatcaagacg
ttcgtgcggcgcgaggacggcagcacgctgcgcgaggcgctgctgcgcgagctcaagcgc
ggcggccagtgctacttcctgcacaacgaggtcgagaccatccacaaccgccgcgcccgt
ctcgaagagctggtgcccgaggcccgcatcgcggtggcccacggccagatgcccgagcgc
gacctggaacaggtgatgaagggcttctaccagcagcgctacaacgtgctgttgtgcacc
accatcatcgaaaccggcatcgacgtgcccagcgccaacaccatcgtgatccaccgcgcc
gaccgcttcggcctggcgcagctgcaccagctgcgcggccgcgtcggtcgctcgcaccac
caggcctacgcctacctgctgacgccgggcgaggacgccatcaccagcaacgccaagaag
cggctggaggcgatccaggccatggaggaactgggatcaggcttctacctggccatgcac
gacctggagatccgcggcaccggcgaagtgctgggcgattcgcagtccggcaacatccag
gaagtcggcttctcgatgtacaacgagatgctgaacgaagcggtgcgcgccctgcgcgcc
ggcgaagagccggacctggacgcccccttcaacctggcctgcgaggtcaacctgcatgcg
ccggcgctgctgccgtccgactactgcgcggacgtgcatgcgcgcctgagcgtctacaag
cgcctggcccacgccgccgacgaggacgacctgatccagatccaggaagaactgatcgac
cgcttcggcaagctgcccgaagcggcgcagacgctgctgaccacgcaccgcctgcgcctg
gccgcgcaaccgctgggcatcgtcaagatcgacgccagcgaaacccaggcgctgctgcag
ttcggccccaagaccagcgtcgatccggcgaaaatcatcgaactggtgcagcggcaacgc
cacatcaaactcgcaggacaggataaattgcgggttgagatcaaggccgcgcagatcccg
gcccgcgccgacgccgtgcgcgccgtgctgcgcgccttgaagtaa
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