Achromobacter sp. HNDS-1: ABFG95_23900
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Entry
ABFG95_23900 CDS
T10763
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
achh Achromobacter sp. HNDS-1
Pathway
achh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABFG95_23900 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achh03021
]
ABFG95_23900 (rho)
03019 Messenger RNA biogenesis [BR:
achh03019
]
ABFG95_23900 (rho)
Transcription machinery [BR:
achh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABFG95_23900 (rho)
Messenger RNA biogenesis [BR:
achh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABFG95_23900 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
XBO97886
UniProt:
A0AAU7L979
LinkDB
All DBs
Position
complement(5176967..5178226)
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AA seq
419 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GVAPEAIKHRIMFENLTPLHPNRTMRLERDIKSEENLTGRILDVFAPIGMGQRGLIVASP
KSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINL
NKSGTRREELLIAPDLLQKVWVLRKFIHDMDEVQSMEFILDKMRATKTNAEFFDMMKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaacgaactgaaggcgctgcatgtctcgcagctgctggaaatggccgctggc
ctggaaatcgagaacgccaaccgcctgcgcaagcaggagctgatgttcgccatcatgaaa
cggcgcgccaagcagggcgagcagatctttggcgacggcgtgctggaagtcctgcccgat
ggcttcggtttcctgcgctcgcccgagacctcgtatctggccagcacggacgacatctac
atctcgccgtcccagatccgccgcttcaacctgcacaccggcgactcgatcgaaggcgaa
gtgcgcacgcccaaggatggcgagcgttatttcgcgctggtcaaggtggacaaggtcaac
ggcgtggcgcccgaggcgatcaagcatcgcatcatgttcgagaacctgacgccgttgcat
ccgaaccggaccatgcgcctggaacgcgacatcaagagcgaagagaacctgacgggccgc
atcctggacgtcttcgcccccatcggcatgggccagcgcggcctgatcgtcgccagcccc
aagtccggcaagacggtgatgatgcagcacatcgcgcacgccatcaccaccaactacccc
gacgcggtcatgatcgtcctgctggtggacgagcgccccgaggaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgatgagcccgccacccgccacgtg
caggtcgccgaaatggtcatcgaaaaggccaagcgactggtcgaaatgaagaaggacgtg
gtgatcctgctggactcgatcacccgtctggcccgcgcctacaacaccgtggtgccggcc
tccggcaaggtgctgaccggcggtgtcgacgccaacgccctgcaacgtcccaagcgcttc
ttcggcgccgcgcgcaacctcgaggaaggcggttcgctgaccatcctgggcaccgcgctg
atcgagaccggcagccgcatggacgaagtcatctacgaagaattcaagggcaccggcaac
tccgaagtgcacctggaacgccgcctggcggaaaagcgcgtctacccgtccatcaacctg
aacaagtcgggcacccgccgcgaggaactgctgatcgcgccggacctgctgcagaaggtc
tgggtgctgcgcaagttcatccacgacatggacgaagtccagtccatggaattcatcctg
gacaagatgcgcgccaccaagaccaacgccgaattcttcgacatgatgaagaagaagtaa
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