Achromobacter sp. HNDS-1: ABFG95_24155
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Entry
ABFG95_24155 CDS
T10763
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
achh Achromobacter sp. HNDS-1
Pathway
achh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
achh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABFG95_24155 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achh03021
]
ABFG95_24155 (rpoD)
Transcription machinery [BR:
achh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABFG95_24155 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
MitMem_reg
TMPIT
Motif
Other DBs
NCBI-ProteinID:
XBO97937
UniProt:
A0AAU7L7P5
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Position
5232847..5235114
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AA seq
755 aa
AA seq
DB search
MTKSTGKSSSAIDATDTQATKAKRVVSMAAEKAPAKTAVKVAKPAAKTAAKKAAAKTAAA
DKPEKVTKARAKKAEDKLADLVGSARPAPSGRRPGRPAKNANNDSDGFDDTMDGEGEVLP
DLKPPKRGGKRGKADPKDLIARGPVSAEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLP
DDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVD
SDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHV
MRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADEDESDDGPAGGMSSKQLEDLRVKALA
KFDEVGKQFDKMRLSYEKDGYKSDVYVRAQESIQNELMGIRFTAKMVEKLADTLRNQVEE
VRQLERAVLHTCVDRAGMPRTHFIKVFPGNETNLQWVVDEVAAGHPYAETLERQIPAVQE
LQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGL
QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
INKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHL
GDFIEDTSTLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQ
FDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccaccggcaaatcctcctctgcaattgatgcgaccgacacccaggccacc
aaggccaagcgtgtcgtcagcatggcggcggaaaaagcgcccgccaagacggcggtgaag
gtcgccaagcctgccgctaagacggccgccaagaaggcggctgccaagacggcggcggca
gacaagcccgagaaggtgaccaaggcgcgtgccaagaaggccgaggacaagctggccgat
ctggtcggcagcgcgcgtccggcccccagcggccgccgcccgggtcgcccggccaagaac
gccaacaacgattccgacggtttcgacgacaccatggacggcgaaggcgaggtcctgccg
gacctgaagccgcccaagcgcggtggcaagcgcggcaaggcggatcccaaggatctgatc
gcccgcggccccgtctcggccgaagaatacgaagcccgccgcaaccgcctcaagcagctg
atcaagctgggcaaggatcgcggctacctgacctacggcgaaatcaacgaccatctgcct
gatgacctggtcgacgccgaagccatcgacggcatcatcagcacgttcagcgacatgggc
atcgcggtctatgaccaggcgcccgatgccgaaacgctgctgatgagcgaaaacgcgccg
gtcgcgtccaacgacgatgacgtcgaagacgaagccgaagccgcgctgaccaccgtggac
tccgacttcggccgcaccaccgaccccgtgcgtatgtacatgcgcgaaatgggctcggtg
gaactgctgacgcgcgagggcgaaatcgagatcgccaagcgcatcgaagacggcctgaag
cacatggtcatggccatctcggcctgcccgaccaccatcaacgaaatcctcgctcacgtc
atgcgcgtgcgtgaaggccaggcgcagatcgacgaagtggtcgacggcctggtcgatccg
gaagacggcgaagagtatgccggcgccggcgtcaccgccgatgaagacgagagcgatgac
ggccccgctggcggcatgtccagcaagcagctggaagacctgcgcgtgaaggcgttggcc
aaattcgacgaggtcggcaagcagttcgacaagatgcgcctgtcgtacgaaaaggacggc
tacaagtcggacgtctacgtgcgcgcgcaggagtcgatccagaacgaactgatgggcatc
cgcttcaccgccaagatggtcgagaagctggccgacacgctgcgcaaccaggtggaagaa
gtgcgccagctcgagcgcgccgtcctgcacacgtgtgtggaccgtgccggcatgccgcgc
acgcatttcatcaaggtgttcccgggcaacgaaaccaatctgcagtgggtcgtcgacgaa
gtggccgccggccatccgtacgccgaaacgctggagcgccagatccccgccgtgcaggaa
ctgcagcagaagctgatcgacctgcagacccgcgtggtgctgccgctcaaggacctcaag
gacgtcaacaagcgcatggccactggcgaagccaaggcccgcaaggccaagcgcgaaatg
accgaggccaacctgcgcctggtgatctcgatcgccaagaagtacacgaaccgtggcctg
cagttcctggacctgatccaggaaggcaacatcggcctgatgaaggcggtggacaagttc
gagtaccgtcgcggctacaagttctcgacctacgcgacgtggtggatccgtcaggccatc
acccgctccatcgccgaccaggcgcgcaccatccgtattccggtccacatgatcgaaacg
atcaacaagatgaaccggatcagccgccagatcctgcaggaaaccggcgccgagccggat
cccgcgaccctggcgcagaagatggacatgcccgaggacaagatccgcaagatcctgaag
atcgccaaggagccgatctccatggaaacgccgatcggcgacgacgacgactcgcacctg
ggcgatttcatcgaagacacctcgaccctggcgccttcggacgccgcgctgcatggttcc
atgcgcgacgtggtcaaggaagtgctagactccctgaccccgcgggaagccaaggtgctg
cgcatgcgtttcggtatcgaaatgagcaccgaccagaccctggaagaagtgggcaagcag
ttcgacgtcacgcgtgagcgcatccgccaaatagaggctaaagcgctgcgcaagctgcgc
cacccgagccgggccgacaagctgaagagcttcctggaagggcaataa
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