Acinetobacter chinensis: CDG60_05345
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Entry
CDG60_05345 CDS
T06795
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
achi
Acinetobacter chinensis
Pathway
achi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
achi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CDG60_05345 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achi03021
]
CDG60_05345 (rpoD)
Transcription machinery [BR:
achi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CDG60_05345 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
DinB
Motif
Other DBs
NCBI-ProteinID:
AXY56053
UniProt:
A0A3B7M0E6
LinkDB
All DBs
Position
complement(946839..948728)
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AA seq
629 aa
AA seq
DB search
MSDMTSPTSQVAALISRGKEQGYLTYAEVNDHLPDSITESEQIEDIIQMLQDVGIPVHER
APESDDTMFGDNAEAADEVAEEEAAAVLASVENEPGRTTDPVRMYMREMGTVELLTREGE
ISIAKRIEEGIRDVLNSIAYWPNAVEVVLQEYKEYETGERRLADILSGYLDPETDEDIPE
VLEDSAEELEDEEDSSKKPTKDVKLDDDDEEEESEGDDDSEGESGPDPEIAKARFEELEN
AWNTAKQAIAQHGRNSAQGTEAMEALAAVFMMFKFTPRLFDIISEMIRGTHEQIRTSERE
VMRYAVRRGRMDRTQFRTSFPGQESNPAWLDEQIAKAPAELKGYLEKVRPDVLAFQQKIA
DLEKELGLNVKDIKDISKRMAVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINR
VSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIED
SNITSPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatgacttcccctacttcacaggtagcggcgctgattagccgaggcaaggaa
cagggttacttaacttacgctgaagttaacgatcatctgccggactcaatcacagaaagc
gagcagattgaagacattattcagatgcttcaggacgttggtattcctgtacacgaacgt
gcgcctgaatctgacgatacgatgttcggtgacaacgcggaagcagccgatgaggttgca
gaagaagaagccgctgcggtacttgcatctgttgaaaatgaacctggtcgaaccacagac
cctgtccgtatgtatatgcgtgaaatgggtaccgttgaactgttgacccgtgaaggcgaa
atcagtattgcaaaacgtatcgaggaaggtatccgcgacgttctgaactcgattgcctac
tggccaaatgcagtggaagtggttcttcaggaatacaaagaatacgaaaccggtgagcgc
cgtcttgccgatattttatcaggttatttagaccctgaaacagatgaagatattccagaa
gtactggaagacagcgcagaagaacttgaagacgaagaagattcatctaaaaagccaacc
aaggatgtaaaactggatgacgatgatgaagaggaagagtctgagggtgatgatgactct
gaaggcgaatcaggtccggatcctgaaattgcaaaagcacgttttgaagaactggaaaat
gcctggaacactgcgaaacaggcaattgcacagcatggacgaaacagcgctcagggtact
gaagcgatggaggcacttgccgctgtctttatgatgttcaaattcactccacgtcttttc
gatattatttcagaaatgatccgtggcacacatgaacagatccgtacttctgaacgtgaa
gtgatgcgttatgcggtccgtcgtggccgtatggaccgtactcagttccgtacttctttc
ccaggtcaggaatcaaatcctgcatggctggatgagcagattgccaaagcgcctgctgaa
ctgaaaggctatcttgaaaaagttcgccctgatgtactggcattccagcagaaaattgca
gatcttgagaaagaacttggcttaaatgtaaaagacattaaagacatttccaaacgtatg
gcggttggtgaagcaaaagcccgtcgtgcgaaaaaagaaatggtcgaagccaacttacgt
ctggtgatctcaattgcgaaaaaatacaccaaccgtggcttgcagttcctggatctgatt
caggaaggtaacatcggtctgatgaaagccgtggataagtttgaataccgtcgtggttat
aagttctcaacttatgcaacatggtggatccgtcaggcaatcacgcgttcaatcgcggat
caggcacgtacaatccgtattccagtacacatgatcgaaacgatcaacaagatcaaccgt
gtatcccgtcagctgcttcaggaaatgggtcgtgagcctacccctgaagaactgggcgaa
cgcctggaaatggacgaagtgaaagtacgtaaagtgcttaaaattgccaaagaaccgatt
tccatggaaacgccaatcggtgatgatgaagattcgcatcttggtgacttcattgaagac
agcaacattacatctcctgtagatgctgcgacttcagaaggcttaaaagaagcaacccgt
gaagtcctggaaaacctgactgaacgtgaagcaaaagttctgaaaatgcgtttcggtatt
gatatgccaactgaccatactctcgaagaagtaggtaaacagtttgatgtgacccgtgaa
cgtatccgtcagatcgaagcgaaagcgctgcgtaaattacgtcacccttcccgctcagaa
cacttacgttctttcctggaaaacgactga
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