Acinetobacter chinensis: CDG60_11875
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Entry
CDG60_11875 CDS
T06795
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
achi
Acinetobacter chinensis
Brite
KEGG Orthology (KO) [BR:
achi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
achi03016
]
CDG60_11875
Enzymes [BR:
achi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CDG60_11875
Transfer RNA biogenesis [BR:
achi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CDG60_11875
Prokaryotic type
tRNA splicing ligases
CDG60_11875
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
OrtA
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AXY58468
UniProt:
A0A3B7M1J4
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All DBs
Position
2305112..2306371
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AA seq
419 aa
AA seq
DB search
MSVIEQIEKQASNERAYNIIQDAKGVPVKMWTKGVPVDEKSKDQLLKTAQMPFIYKWMAV
MPDVHVGIGATIGSVIPTKGAIIPAAVGVDIGCGMMAARTSLTASDLPDNLHGLRTELER
LIPHGMTKGRGRRDRGSWENPSERVDAVWAELITDFEYICAKHPRLKNTNNRKQLGTLGT
GNHFVEICLDEHQQVWIMLHSGSRGVGNAIGNYFIELARQDMQKHFINLPDKDLAYLVEG
TEHFDDYWFAVGWAQRFAMRNRELMMEAATQALRIIINKPFNAKVEAVNCHHNYVDKEEH
FGQEVLVTRKGAVRARLGEYGIIPGSMGAKSFIVKGKGNQDSFCSCSHGAGRVHSRTAAK
KLFTVEDQIEQTQGVECRKDAAVIDEIPSAYKPIEDVMKAQSDLVEVVYTLNQVVCVKG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtaattgaacaaatcgaaaaacaagcatcgaatgaacgtgcttataacattatt
caggatgctaaaggcgttccagttaagatgtggaccaaaggtgtccctgtcgatgagaaa
tcgaaagatcaattattaaaaacagcacagatgccgtttatttataaatggatggcagtg
atgccagacgttcatgttggaatcggtgcgaccattggtagcgtgattccaaccaaaggc
gcgattattcctgctgctgtaggagtcgatatcggttgcggaatgatggcagcgcgtact
tccttaacagcttctgatttaccagataatttacatggattgcgtaccgaacttgagcgt
ttaatccctcatggtatgactaaagggcgtggacgtcgtgaccgtggttcctgggaaaat
ccatctgaacgtgtggatgctgtatgggctgaactcatcacagattttgaatacatttgt
gccaagcatccacgtttaaaaaataccaataaccgtaaacaactgggaactttgggaact
ggaaatcactttgttgaaatctgcctggatgagcatcagcaggtctggatcatgttgcat
tcaggttcccgtggtgttggaaatgcgattggtaactactttattgagcttgcacgtcag
gatatgcagaagcattttatcaatcttcctgataaagatctggcatatttagtggaggga
acggagcattttgatgattactggtttgccgttggatgggcacagcgttttgccatgaga
aaccgtgaattaatgatggaagctgcaacccaggctttacgtatcattattaacaaaccg
tttaatgccaaagttgaagcagtaaactgtcaccataattatgtggataaagaagaacat
ttcggtcaggaggttttagtcacccgtaaaggtgctgtacgtgcccgcctgggtgagtat
ggaattattccaggttcgatgggtgcgaagtcctttattgtaaaaggtaaaggaaatcag
gattctttctgttcctgttcgcatggtgcaggtcgtgtgcatagccgcactgctgccaaa
aaactttttacagtagaagatcagattgaacagactcagggtgtggaatgtcgtaaagat
gcagctgtgattgatgagattccatctgcctataaaccgattgaagatgtgatgaaagcg
cagagcgatctggtggaagtggtatacaccctgaaccaggttgtttgtgtgaaggggtaa
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