Achromobacter sp. JD417: LN047_05150
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Entry
LN047_05150 CDS
T11120
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
achj Achromobacter sp. JD417
Pathway
achj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN047_05150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achj03019
]
LN047_05150
Enzymes [BR:
achj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN047_05150
Messenger RNA biogenesis [BR:
achj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN047_05150
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XGB28701
LinkDB
All DBs
Position
1127702..1129174
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AA seq
490 aa
AA seq
DB search
MTESTQTVAPTADAPAPTFDDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVSGRDVMGA
AQTGTGKTAAFTVPILHRLMPLANTSASPARHPVRALILAPTRELADQVFESVKRYSKKT
PLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML
DMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATATTITQ
IAYKMTSDAKRAAVVHLVKSRGLNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQA
DRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGAS
GEAIALFTADEERFLLDIEKLIKREVPRGTLDVPADLIARSHRRSDSSSHSREGREGGRE
SRGDRGRSSERRSSHHSGGSRQPVDDFFFKPYEPSAPVAPAEEQESRGNATPSSAPKRQL
AVLLGGSRKP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatccactcaaaccgtagcacccaccgctgacgcgcccgcgccgacgttcgac
gatttcgggttgcaccccctgttgttgcagtccatcgccgaaaccggctacaccaccccg
acgcccatccaggcgcaagccattcccgtggtggtgtcgggccgcgacgtcatgggcgcc
gcccagaccggcaccggcaagacggcggcgttcacggtcccgatcctgcatcgcctcatg
ccgctggccaacaccagcgcttcgcccgcccggcatccggtgcgcgcgctgatcctggcg
cccacgcgcgaactcgcggaccaggtcttcgagagcgtcaagcgctacagcaagaagacg
ccgctgcgctcggcagtggtgttcggcggcgtggatatcggtccgcaaaaggaagcgctg
cgccgcggctgcgaagtgctggtcgccacgccgggtcgtctgctcgatcacgttgaacag
aagaacgtgaacctcagccaggtcggcatcctggtgctggacgaagcggaccgcatgctc
gacatgggcttcctgcccgatctggaacgcatcatccgcctgctgcccgcgcagcgtcag
ggccttttgttctcggccacgttcagcaacgaaatccgcaagctgggccggtcgtacctg
aaccaccccgtcgaaatcgaagtggcggcgcgcaacgccaccgccacgaccatcacgcag
atcgcctacaagatgaccagcgacgccaagcgcgccgccgtcgtgcatctggtgaagtcg
cgcggcctcaatcaggtcatcgtcttctcgaacaccaagatcggcaccgcacgcctggcg
cgcgacctggaacgtgatggcgtcaaggccgaatcgatccacggcgacaagacccaggcc
gaccgcatgaaggcccttgaggccttcaaggccggcgaactcgaagtgttggtcgccacc
gacgtggccgcgcgcggcctggatgtggccggcgtgccctgcgtcatcaactacgacctg
ccgtacaacgccgaagactacgtgcaccgcatcggccgtaccggccgcgcgggcgcatcg
ggagaagccattgcgctgtttaccgccgacgaagagcgcttcctgctcgacatcgagaag
ctcatcaagcgcgaagtgccgcgcggcacgctcgacgtgcccgccgacctgatcgcgcgc
agccatcgccgcagcgacagcagctcgcattcgcgcgaagggcgcgaaggcggccgcgaa
agccgcggcgaccggggccgttcttccgagcgccgttccagccaccattccggcggctcg
cgccagcccgtggacgacttcttcttcaagccctacgagccctcggcgcccgtcgcgccg
gccgaagaacaggaatcgcgcggcaacgccacgccgtcgtccgcgcccaagcgccaactg
gccgttctgcttggcggcagccgcaagccctga
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