Achromobacter sp. JD417: LN047_05645
Help
Entry
LN047_05645 CDS
T11120
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
achj Achromobacter sp. JD417
Pathway
achj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN047_05645 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achj03019
]
LN047_05645 (pnp)
03016 Transfer RNA biogenesis [BR:
achj03016
]
LN047_05645 (pnp)
Enzymes [BR:
achj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LN047_05645 (pnp)
Messenger RNA biogenesis [BR:
achj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LN047_05645 (pnp)
Transfer RNA biogenesis [BR:
achj03016
]
Prokaryotic type
tRNA degradation factors
LN047_05645 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_KhpA-B
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
XGB28793
LinkDB
All DBs
Position
1226615..1228777
Genome browser
AA seq
720 aa
AA seq
DB search
MFNKVTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVAAKKAKPGQTFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVLHTLSV
NPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYTINPTASELKSSKLNLVVA
GTENAVLMVESEADQLSEEVMLGGVVYGHQQMQTVINAIHDLVKDAGKPDWDWQAPAKDE
ALIAAVTAAAQEGLNAAYQIREKQARTAKLREVSAEVSAKLAAAAAEKGESAPDAVTVDN
IMFSLESAIVRGQILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVAT
LGTKQDEQIIDALMGEYRDRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPLL
PAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPIKDHVAGVAMGLILDGGKF
AVLTDILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALDQAREGRLHILG
KMKEALDGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTI
VIASVDEAQAKEAQRRIVELTADVEVGQIYEGSVLRLLDFGAIVQVLPGRDGLLHISEIA
NYRIANINDVLKVGQQVRVKVIEADDKGRLRLSIKAIGGIEQQQAAAAPEAAPQSEPQAE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaagtgactaaatcgttccagtacggccagcatacggtcgtcctggaaact
ggcgagatcgctcgccaggcctccggcgccgttgtggtgtcgatcgaggacaccgtcgtc
ctggccaccgtcgtggctgccaagaaggccaagccgggtcagacgttcttcccgctgacc
gtcgactacatcgaaaagacctacgccgccggccgtatcccgggcgggttcttcaagcgc
gaaggcaagccctccgaaaaggaaacgctgacgtcgcgcctgatcgaccgtccgctgcgt
ccgctgttccccgaagacttctacaacgaagtccaggtggttctgcacacgctatcggtc
aatcctgaaatcgatcccgacatcgccgccatgatcggcgcctcggccgcgctggccatc
tcgggcatcccgttcaatggcccgatcggcgccgcgcgcgtgggttacatcgatggtcaa
tacaccatcaacccgaccgcatcggaactgaagtcctccaagctgaacctggttgtcgcc
ggtacggaaaacgccgtgctgatggtcgaatcggaagctgatcagctgtccgaagaagtc
atgttgggcggcgtggtctatggccaccagcaaatgcagaccgtcatcaacgccattcac
gacctcgtgaaggacgccggcaagcccgattgggattggcaagctcccgccaaggacgag
gccctgatcgccgcggtcaccgccgccgcccaggaaggcctgaacgccgcctaccagatc
cgcgaaaagcaggcccgcacggccaagctgcgtgaagtgtcggccgaagtgtcggccaag
ctggccgccgccgccgccgaaaagggcgaatcggctccggacgccgtcacggtcgacaac
atcatgttctcgctggaatcggccatcgtccgcggccagatcctgaacggcgaaccgcgt
atcgacggccgcgacacccgcaccgtgcgtccgatcagcgtgcgtctgggcgtgctgccc
cgcgcgcacggcagcgcgctgttcacccgtggcgaaacccaggcgctggtcgtggccacg
ctgggcaccaagcaagacgaacagatcatcgacgcgctcatgggcgagtaccgtgaccgc
ttcatgatgcactacaacatgcctccgttcgccaccggcgaaaccggccgcatcggtgtg
cccaagcgccgcgaaatcggccacggccgtctggccaagcgctcgctggtgccgctgctg
ccggctccggaagacttccagtacacgatccgcctcgtgtcggaaatcaccgaatccaac
ggctcctcgtcgatggcttcggtctgcggcggctcgctcgccatgatggacgccggcgtg
cccatcaaggatcacgtggccggcgtggccatgggcctgatcctggacggcggcaagttc
gccgtgctgacggacatcctgggcgacgaagatcacctgggcgacatggacttcaaggtt
gcgggcaccgaaaacggcgtcaccgcactgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaggttgcgctggaccaggcccgtgaaggccgtctgcacatcctcggc
aagatgaaggaagccctggacggttcgcgcggcgagctgtcggctttcgcgccgcgcatg
ctgaccatcaagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgccacc
atccgcgcgctgaccgaagaaaccggcacgcagatcgacatctccgacgacggcacgatc
gtgatcgccagcgtcgacgaagcgcaggccaaggaagcccagcgccgcatcgtcgagctg
accgccgacgtcgaagtgggccagatctacgaaggctcggtcctgcgtctgctggacttc
ggcgccatcgtgcaagtgctgccgggccgcgacggcctgctgcacatctcggaaatcgcc
aactaccgcatcgcgaacatcaacgatgtgctgaaggtcggccagcaagtccgcgtcaag
gtcatcgaggccgacgacaagggccgcctgcgcctgtccatcaaggcgatcggcggcatc
gagcagcagcaagccgctgccgcacccgaagccgctccccaatcggaaccgcaagctgaa
taa
DBGET
integrated database retrieval system
