Achromobacter sp. JD417: LN047_06175
Help
Entry
LN047_06175 CDS
T11120
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
achj Achromobacter sp. JD417
Pathway
achj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
achj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LN047_06175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
achj03400
]
LN047_06175 (mfd)
Enzymes [BR:
achj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN047_06175 (mfd)
DNA repair and recombination proteins [BR:
achj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LN047_06175 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
UB2H
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
XGB28893
LinkDB
All DBs
Position
complement(1341797..1345279)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSASSLMPAPSSSATAAPPVPATVPTLSALKPGTRYAQPRPPGSGDAWLLADLARQAGGP
LVILTAEPLEAQRLAEEIQLFAPGLRVRQLPDWETLPYDAFSPHQDLISERLHTLHSLMM
KTVDVLTVPITTALYRLAPPSFLAAYTFSFKQKDRLNEAALRAQLTLANYNHVTQVTAPG
EFCLRGGLIDLFPMGSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMD
EDARNRFRARFREIFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFEETATLFDYVAEGTV
MVTVGDIDDAIQRFNQDTASRYGFLKSDRERPVLPPSALFLDNESLYGRLKAFRRLSLTA
GQPHPDFRAAPDVSVARRAEDPIAKLRTLVQAGQTRVLLCADSAGRRETLVQMLHEFGVT
PDAQPETIEAFLASDAHFGIVASPLGVGFQLPDANLAFLTENDLYPGLATPGRRGKRDQE
RASNVEAMVRDLSELREGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYANGSTLYVP
VSQLHVIARYSGADPEAAPLHQLGSGQWDKARRKAAKQVRDTAAELLALYAQRAAREGFA
FNLPLNDYEAFAEGFGFEETADQAAAIQAVISDMTSGRPMDRLVCGDVGFGKTEVALRAA
FLAVANGKQVALLCPTTLLAEQHAQTFTDRFADWPVRVVELSRFRSAKEVSAAIEGINDG
RVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRT
LGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETI
HNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANT
IVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSG
FYLAMHDLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRAGEEPDLDAPFNLAC
EVNLHAPALLPSDYCADVHARLAIYKRLAHAADEDDLIHIQEELIDRFGKLPEAAQTLLA
THRLRLAAQPLGIVKIDASEAQALIQFGPKTSVDPARIIDLVQRQRHIKLAGQDKLRAEI
KAPLIPARADAVRAVLRALK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcttccagcctgatgcccgccccttcctcctccgccacggccgcccctcccgtc
cccgccacggttcccaccctgtccgcgctgaagcccggcacgcgctacgcgcagcccagg
ccgccgggttccggcgacgcctggctgctggcggatctggcccgccaggccggcggcccg
ctggtcatcctgacggccgagcccctggaggcgcagcgcctggccgaggaaatccagctg
ttcgcgcccggcctgcgcgtgcggcagttgcccgactgggaaacgctgccctacgacgcg
ttctcgccgcaccaggacctgatttcggagcgcctgcacacgctgcattcgctgatgatg
aagacggtggacgtgctgacggtgcccatcaccacggcgttgtaccggctggcgccgccc
tcgttcctggccgcctacacgttctcgttcaagcagaaggaccggctgaacgaagcggcg
ctgcgcgcgcagctcacgctggccaattacaaccacgtcacccaggtgaccgcgcccggc
gaattctgcctgcgcggcggcctgatcgacctgttcccgatgggctcggtggtgccatac
cgcctggacctgttcgacgacgaaatcgagaccatccgcagtttcgacgtcgacacccag
cgcagcctgtaccccgtgcgcgaggtccagctgctgccaggccgcgaattcccgatggac
gaggacgcgcgcaaccggttccgcgcgcgctttcgggaaattttcgaaggcgatccctcg
cgcgccctgccctacaaggacatcggcaacggcattccctttgccggcgtcgagtactac
ctgccgctgttcttcgaagagaccgccacgctgttcgactacgtggccgaaggcacggtc
atggtcacggtcggcgacatcgacgacgcaatccagcgcttcaaccaggacactgccagc
cgctacggcttcttgaagagcgatcgcgagcgtcccgtgttgccgccctcggccctgttc
ctggataacgaatcgctgtatggccggctgaaggcctttcgccgcctgtcgctgactgcc
ggccagccgcaccccgacttccgggccgcgcccgacgtcagcgtggcgcgccgcgccgag
gatcccatcgccaagctgcgcacgctggtgcaggcgggccagacccgcgtgctgctgtgc
gccgattccgcggggcgccgcgaaaccctggtgcagatgctgcacgagttcggcgtcacg
cctgacgcgcagcccgagaccatcgaggccttcctggcgtcggacgcgcatttcggcatc
gtcgcctcgccgctgggcgtgggcttccagctgccggacgcaaacctcgccttcctgacc
gagaacgacctctatcccggattggcaacgccgggacgccgcggcaagcgcgaccaggag
cgcgccagcaacgtcgaagccatggtgcgcgacctgtccgagctgcgcgagggcgatccc
gtcgtccacgcccagcacggcatcgggcgctaccacggcctggtcaacatggacatgggc
gaaggcgagatggagtttcttcatcttgagtacgccaacggcagcacgctgtacgtgccg
gtgtcgcagctgcacgtaatcgcccgttacagcggcgcggatccggaagccgcgccgctg
caccagctgggctcggggcaatgggacaaggcccgccgcaaggcggccaagcaggtgcgc
gacaccgccgcggaactgctggcgctgtatgcgcagcgcgccgcgcgcgaaggctttgcg
ttcaacctgccgctgaacgactacgaggcgttcgccgagggcttcggcttcgaagagacg
gccgaccaggccgccgcgatccaggccgtcatcagcgacatgacctcgggccgcccgatg
gaccgcctggtctgcggcgacgtcggcttcggcaagacggaagtcgcgctgcgcgccgcc
ttcctggccgtcgccaatggcaagcaggtggcgctcttgtgccccaccaccctgctcgcc
gagcagcacgcccagacctttaccgaccggttcgccgactggcccgtacgcgtggtggaa
ctgtcgcgcttccgctcggccaaggaagtgtcggccgccatcgaaggcatcaacgacggc
cgggtcgacatcgtcatcggcacgcacaagattctgtcgaaagatgtgaagttcaagcgg
ctgggtctggtcatcatcgacgaggaacaccgtttcggcgtgcgccagaaggaagcgctc
aagtcgctgcgggccgaggtcgacgtcctgacgctcaccgccacgcccattccccgcacg
ctcggcatgtcgctggaaggcatccgcgacttctccgtcattgccacggcgccgcagaag
cgcctggccatcaagaccttcgtgcggcgcgaagacggcagcacactgcgcgaggccctg
ctgcgcgaactcaagcgcggcggccagtgctacttcctgcacaacgaggtcgagaccatc
cacaaccgccgggcgcgcctggaagaactggtgcccgaggcccggattgccgtcgcgcac
ggccagatgcccgagcgcgaactcgaacaggtcatgaagggcttctaccagcagcgctac
aacgtgctgctgtgcaccaccatcatcgaaaccggcatcgacgtgcccagcgccaacacc
atcgtgatccatcgcgccgaccgcttcggcctggcgcagcttcaccagttgcgcggacgc
gtcgggcgctcgcaccatcaggcctacgcctacctgctgacgccgggcgaggacgccatc
accagcaacgccaagaagcggctggaagccatccaggccatggaagagctcggctcgggc
ttttacctggcgatgcacgacctcgaaatccggggcaccggtgaagtgctgggcgactcg
caatcgggcaacatccaggaagtgggcttctcgatgtacaacgagatgctcaacgaggcc
gtgcgcgcgctgcgcgccggcgaagaacccgacctggacgcgcccttcaacctggcgtgc
gaggtcaacctgcacgccccggcactgctgccgtccgactattgcgccgacgtgcatgcg
cgcctggccatctacaaacggctggcgcacgccgccgacgaagacgacctgatccacatc
caggaagaactgatcgaccgattcggcaagctgccggaagcggcccaaaccctgctggcc
acgcaccgcctgcgccttgcggcccagccgctgggcatcgtcaagatcgacgccagcgaa
gcgcaggccctgatccagttcggccccaagacctcggtcgatccggcccgcatcatcgac
ctcgtccagcggcagcgtcacatcaagctggccggacaggacaaattgcgcgccgagatc
aaggcccccctcattcccgccagggccgacgccgtgcgcgccgtcctgcgtgcgctcaag
taa
DBGET
integrated database retrieval system
