Achromobacter sp. JD417: LN047_06440
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Entry
LN047_06440 CDS
T11120
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
achj Achromobacter sp. JD417
Pathway
achj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN047_06440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achj03019
]
LN047_06440
03009 Ribosome biogenesis [BR:
achj03009
]
LN047_06440
Enzymes [BR:
achj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LN047_06440
Messenger RNA biogenesis [BR:
achj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LN047_06440
Ribosome biogenesis [BR:
achj03009
]
Prokaryotic type
rRNA processing factors
LN047_06440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
XGB28945
LinkDB
All DBs
Position
complement(1403360..1406455)
Genome browser
AA seq
1031 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGIDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDLPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPH
HHIERLRHDDPRLEEVKTSFELVEAPATDAPWQPRESEIKSRPEALVKGITPSQPAPVST
PAAPAAAPAAPAAGAGLGGLFKRLVGWLTGGSEPAKPAPAAAEETAKRAAPARGKGRNGH
DGQDRRGERHSSDRNRNRRGEGRGEGAEATEGGRHHVRGNRRSDAERGERNNRGEGRGER
DTPAATQAALASARPEQTPELNGEDTGAGRNRRRGRGRNRREEGQADAPMSEQESMVAAL
AQTVATALPDAKSDAKPAAEAAMDTADADDLSAEAIPGVEGAEGAADPERKRRRRRSRRG
RRSQDEAGLAGSDEQQEDGAEDAGEQQAEGVDAQAAEPVQTAAAEAAPAAAQQVQAPAQP
VQTAAQPEQAPAEPVQAPKAEPVQAAAEPAVERAAEPAIEPLTQAAAEPVAQPVQTAPEA
TPPVTVQPASEASVPAAPVQAPVEAPAVEPVVPAPAAAPAPAPVAPAPSPVAPASAQQPI
VVPAAAPAAKAQALHDVVNAAGLKWVETDPERHAQTQQRIAASYAPARLGRERKPVTPVS
NEPLVQVETRH
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcatcaggaagaattacgcgtcgctatcgtcgat
gggcaaaaactcatcgaccttgacatcgagactgccggccgcgaacagcgcaaaggcaac
atctacaaaggtgtcatcacccggatcgaacccggcctcgaagcttgcttcgtcaactac
ggcgaggaccgccacggctttctgcccttcaaggaagttgcccgcagcttcttcaaggaa
ggcatcgatgtccgcaccgcccgtatccaggacgccctgcgcgaaggccaggaactgatc
gtccaggtcgaaaaggaagaacgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggccgctacctggtcctgatgcccaacaacccccgcggcggtggtgtttcgcgc
cgcgtcgagggcgaggaccgccaggaactgcgcgacacgatggagcagcttgacctgccc
cagggcatgagcatcatcgcccgcaccgcaggcatcggccgcaacgtcgaggaactgcaa
tgggacctgtcctatctgctgcagctctggaccgccatcgacggcgccgcgcgcgacaac
tccgcgcccatcctgatctatctcgaatccagcctggtcatccgcgcgatccgcgattac
ttctcgccggaaatcggcgagatcctgatcgataccgacgagatcgccgaccaggccacc
gccttcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgtgacgac
atccccctcttctcgcgcttccagatcgaacaccagatcgagacggcctactcgcgcacc
gtgcaactgccctcgggcggcgccatcgtcattgaccacaccgaagcgctggtgtccgtc
gacgtgaactcggcccgctcgacccgcggcgccgacatcgaggaaaccgcgctgcgcacc
aactcggaagcggcagacgaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgtgatgccctccatttcgaccgtgcccgcgtccagatgggcaagatctcgcgcttt
ggcctgatggaactgtcgcgtcagcgcctgcgccccgccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaagccatgaaggagaacaccgcggcggtccacgcccag
gtgcccgtcgacgtggccacctacctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctgaaggtcaacctgatgctgatccccaacaagcatctggaaacgccgcac
caccacatcgagcgcctgcgccacgacgacccccgcctggaagaagtgaagaccagcttc
gaactggtggaagcgccggccacggatgcgccctggcagccccgcgaaagcgaaatcaag
tcgcgcccggaagccctggtcaagggcatcacgccctcgcagcccgctcccgtctccacg
cccgcagcgccggccgcggcacctgccgcgcccgcagcaggcgccggtctgggcggtctg
ttcaagcggctggtcggctggctgaccggcggctccgagcccgccaagcccgcgcccgcc
gctgccgaggaaaccgccaagcgcgccgccccggcccgtggcaagggccgtaacggccat
gacggccaggaccgccgcggtgaacgccacagctccgaccgcaaccgcaatcgccgcggc
gaaggccgtggcgaaggcgccgaggccaccgaaggcggccgtcaccacgtgcgtggcaat
cgccgctcggacgccgagcgcggcgaacgcaacaaccgtggcgaaggccgcggcgagcgc
gacacgccggccgccacccaggcagccctggcgtccgcccgtcctgaacaaacccctgag
ctcaacggcgaggacaccggcgcaggccgcaaccgccgtcgtggccgtggccgcaaccgc
cgcgaggaaggccaggccgacgcgccaatgagcgaacaggaaagcatggtcgccgcgctg
gcccagacggtcgccaccgcgctgcccgacgccaagtcggatgccaagcctgccgccgaa
gctgccatggacaccgctgacgccgacgatctgtccgccgaagctatcccgggcgttgaa
ggcgccgaaggcgcggccgatccggagcgcaagcgccgccgccgccgcagccgccgtggc
cgccgcagccaggacgaagctggcttggccggcagcgacgagcagcaggaagacggcgcc
gaagacgctggcgagcagcaggccgaaggcgtcgacgcccaagccgccgagccggttcaa
accgcagccgccgaggcagcgcccgccgcagcccagcaggttcaagcgccggcccagccc
gtgcagaccgccgcgcagcccgagcaagccccggccgaaccggttcaagcgcccaaggct
gagcccgtccaggccgcagcagagcccgccgttgagcgcgcggctgagcccgcgatcgag
cccctgacccaagccgcggctgaacctgtcgcccaaccagtccagaccgcgcccgaagcg
accccgcccgtcaccgtgcaacccgcaagcgaggcttcggtccccgccgcgccggtgcag
gcgccggtggaagcgcccgccgtcgaaccggtcgtcccggctccggcagctgcgcccgcc
cctgcgcccgtcgcgccggccccctcgcccgtggctccggccagcgcgcagcagcccatc
gtggtgcccgccgccgcccccgccgccaaggcgcaggccttgcacgacgtggtcaacgcc
gctggcctgaagtgggtggaaaccgatccggaacgccacgcacagacgcagcaacgcatt
gccgcctcgtatgcgccggctcgcctgggccgcgagcgcaagcccgtgacgcccgtctcg
aacgagccgctggttcaggtcgaaacgcgccactaa
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