Achromobacter sp. JD417: LN047_13350
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Entry
LN047_13350 CDS
T11120
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
achj Achromobacter sp. JD417
Brite
KEGG Orthology (KO) [BR:
achj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
achj03032
]
LN047_13350
03400 DNA repair and recombination proteins [BR:
achj03400
]
LN047_13350
Enzymes [BR:
achj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LN047_13350
DNA replication proteins [BR:
achj03032
]
Prokaryotic type
DNA Topoisomerases
LN047_13350
DNA repair and recombination proteins [BR:
achj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LN047_13350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
NNH1
Motif
Other DBs
NCBI-ProteinID:
XGB30240
LinkDB
All DBs
Position
complement(2894999..2896051)
Genome browser
AA seq
350 aa
AA seq
DB search
MSTRTQKDPDPLPVEEASLTYVDDTQPGYTRVRVNAHTFHYLDEKGARITDEAQIQRINA
LAIPPAYENVWICPLADGHLQATARDARGRKQYRYHPGWTAVRDATKYKNLLSFGHALPR
IRRQVERDMKIPGLTQDKVVATLVRLLEITLIRVGGREYARANKSYGLTTLKRRHTTVAG
SRFRFRFQGKSGVAHDVTVTDRRVARIIKQCLDIPGQQLFQYLDADGDKRPVDSGAVNTY
LRHAGGGEYTAKHYRTWAGSVMAFAALQARPFEDERRAKQEAVDVIKAVSKRLANTPAVC
RACYVHPAIMEAYLTGTLPARTAAPAGPRGLSADERRLLAFLHEQDAGDA
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgagcacccgcacgcaaaaggacccggatccgttgcccgtcgaagaggcatcgctgacc
tatgtggacgacacgcagcccggctacacccgcgtgcgggtcaacgcccatacgtttcac
tatctggacgagaaaggcgcgcgcattaccgacgaggcgcagatccagcgcatcaacgcc
ctggccatcccgcccgcatacgaaaacgtatggatctgcccgctggcggacgggcatctt
caggccacggcgcgcgatgcgcgcggccgcaagcaatatcgctatcatcccggctggacg
gcggtgcgcgacgccaccaaatacaagaatctgctgtccttcggtcacgcactgccccgc
atccggcgtcaggtcgagcgcgacatgaagataccgggcctcacgcaggacaaggtggtc
gcgaccctggtccgcctgctggagatcaccctgatccgcgttggcgggcgcgaatacgcg
cgagccaacaagtcctacggcctgacaacgctcaagcgccggcacacgaccgtggccggc
agccgtttccggttcagattccagggcaagagcggcgtggcccacgacgtcacggtcacg
gaccggcgcgtggcgcgcatcatcaagcaatgcctggacattccgggccagcagctgttt
cagtatctggatgccgatggcgacaagcgccctgtcgattcgggcgcggtcaatacctac
ctgcgtcacgccggcggcggcgaatacaccgccaagcactatcgcacctgggcgggctcc
gtgatggcctttgccgcgctgcaggcgcgcccattcgaagacgagcgccgcgccaagcag
gaggcggtggatgtgatcaaagccgtgtcaaaacggctggcgaatacgcccgccgtgtgc
cgcgcgtgctacgtgcacccagccatcatggaggcctacctgaccggcacgctgcccgcg
cgcacggccgccccagcaggcccccgcgggctcagcgccgacgagcggcgcctgctcgcc
tttcttcatgagcaggacgccggcgatgcgtga
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