Achromobacter sp. JD417: LN047_17010
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Entry
LN047_17010 CDS
T11120
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
achj Achromobacter sp. JD417
Pathway
achj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
achj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LN047_17010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achj03021
]
LN047_17010
Transcription machinery [BR:
achj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LN047_17010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
HTH_23
Sigma70_r4
HTH_11
Sigma70_ECF
GerE
HTH_DeoR
HTH_Tnp_ISL3
LPD26
HTH_29
HTH_28
HTH_Mga
Motif
Other DBs
NCBI-ProteinID:
XGB25579
LinkDB
All DBs
Position
complement(3701374..3701925)
Genome browser
AA seq
183 aa
AA seq
DB search
MSDREHAVAASLSALYTAHCGWLQKWLNRRLQDNHQAADLTQDTFVTLLVRRHALADVRE
PRAFLTTIARGLLVDFWRRRDIEHAWAETLAARPEVTHPSPEVQVQALQALVEIDRKLHR
LGVRARAAFLMHRIHGMTHEAIAAQLRVSERTVRNDIAQAMLCFLLDTDLQPDGLCRGTA
SSG
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaccgagagcacgcagttgccgcatcgctttctgccctgtacaccgcgcattgc
ggctggttgcagaaatggctgaatcgccgtcttcaggacaatcatcaggccgccgacctg
acgcaagacaccttcgtgaccttgctggtgcgacgccatgcgctggccgacgtgcgcgag
ccgcgcgcattcctgaccaccatcgcgcgtggcctgctggtcgatttctggcgccgccgc
gacatcgagcacgcatgggccgagaccctggcggcgcgtcctgaagtcacccacccatcc
cccgaagtgcaggtccaggcgctccaggcgctggtcgagatcgatcgcaagcttcatcgt
ttgggtgtgcgcgcgcgcgcagccttcctgatgcatcgcatccacggcatgacgcacgag
gcgatcgcggcgcaattgcgggtgtccgaacggaccgtccgcaacgacattgcacaggcc
atgctgtgctttctgctcgacaccgacctgcagccggacggcttgtgccgcggcacggcg
agtagcggatga
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