Achromobacter sp. JD417: LN047_23715
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Entry
LN047_23715 CDS
T11120
Symbol
vgrG
Name
(GenBank) type VI secretion system tip protein VgrG
Organism
achj Achromobacter sp. JD417
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Phage_GPD
T6SS_Vgr
Phage_base_V
Sarcoglycan_1
DUF6484
Motif
Other DBs
NCBI-ProteinID:
XGB26809
LinkDB
All DBs
Position
5149119..5157467
Genome browser
AA seq
2782 aa
AA seq
DB search
MNALPSNAPAYSSLNIATLSQQARLLRLDTPLNAELVVEHLNLREGVSRLFSLTLDCLAA
SAEVDVSALLGKEISVSLLQADGAMRRWHAVVEGVDALGADGGLARFRLHAAPWMAALAL
RRDSFIYQDLSVQDIVSEVFSDYPQAAFAFELSQALEPLAVCTQYRESDLAFVERILAEA
GLSYRFEHQQDDGQSTSGGARHRVVIFDADAARPQDPASPLRFHRSDATETSDSITRFAA
RQAVRPNRVARAAWNERTLNAHAAQSQSQVQVESLPVLEDYDYDGHGRYGDDDAAEQSAA
RALRAHESEVVRFEGAGTARSLAAGHVFALSQHARYAEGGGGQAADELGGNRYVVLDVTH
EATNNLGSQAAQVLNTPDMERGTYRNVFAAQPDAAALMPAWRARPTAPESLAAVVVSAAD
APITADRDLRVKVQFPWQRGEKPLPGGLPHRTHGDASGNAPGDDRSGTWLRVASAQAGPN
WGAHHLPRAGTEVIVEFIDGDINQPVVAGQLYNDADLPPWSAGEDGDANHAGVLSGWHSQ
GLDGAGRNQWLFDDTKGKLRTRLASSTAVTQLGLGYLVEQDLDDASRGQWRGTGFELRSD
AWTVVRSGQGMLLSATAREQGKSTQADAEEALLLLRGAQDASRRLNDSAGQHKARPLAAS
EGYDDLLKALDPKLEGRYAAQVNGQAAGKAADGKRTGEAAVERINGPHLLIDSPNSLNLA
TPASAVLHAGEHLHATAQSDAHVAATQTYAAVSARSASVFAQQGAIRAVSAHAPVSLHAH
TDILEALAGQDITVTSSAEGIEILGQQRVTLQAAGGSVILDGADIVFKGPGLFSVKGATH
NFVGPGSDAAALPALPSTTVDDPLIVSAELIHKDGALASAAKKASTSLMAGFGGAAGAGG
GLGGLGDLAPSGLGDLGKTAAGAAAKLSQFAGQANTLAGLAKNPMGALSQAPGLLGGMGS
TPSAVGGLLNTAKNTMGMVSQAQAMIANPMSALPAASGMLASVAPGAGGMIDGATAAVGT
VSKAAEWVKDPTAALPAATDMLASAAPEGASKMITSAASIAGLGKGAEVGSGAGLGADGG
LTGAAATPSFAPTGTGAAQSAAAGSAPASASSPMTAASASPAADPAGAGAPATAGTSATA
GASATAGASGTAGASGTAGASTQATASATTATTPSAAPAATATAASPAGAMADNGAHPTS
GTLRAPSTSDAATQTPTLATAAAGSSAASAIPSQASTSAASAIPSQASTSAGVGTSSGAG
AGIASVAGAGVASGATLAGTSIASNASLASADTGVASGMFLADANPGIASGTSFTSADAG
IASGTSLANADAGIASATSLASADAGITPAASLANTDAGVASAVTSASADDLLASGAADA
GVASAIATSSSGTAVPSIASAAGGAAAFAAGATGVGIPATGALAASLAGRSSSASAAMPI
ATQSGSGSGSESVSGSGSGSAFDSQASKAGGPAFGSSSSDTSTSATQSDAAARSHLSPIA
GTEATGRIEADARTAPGSTHDAAPSASMAAQGHARQAEGSGAAIGLLAAAAGTVAATTSR
RTHAPEGEDATHRAQVDPTRIGAAAAGLAPAFTQGSTTQHLGASPDAHPSTGPAPHHDHT
AERDEQTTQAEQTARDARDWLARGTSAHREGGGDTASGVHASQRADAPVAAGAPAARGPM
NASAHDAAAAAQQDDATKERSPATNAALLASIAAGAGSLLSATSAAASSVTQAASGSTAA
PGSLPDALALPTGAPSVAAPSVPVASDAAISGLPVSSGATAPGAALAGTPSLPESAGVFT
TPPLPGAAPQTPGFVPAPGESLPRGTGLPGTTGDDTFGLPNIEASPSPSVAVGAAGAGAA
VDAAATSGAATSTLPAATGGIASAGPLAGTGAVAGSAGASPRLATADVSEGTAARAGIET
GSADAGVGAGAVAGAAGTGAGAGSGTGAGAGAGTAGAGVGAADAGAGAIPGADATASSPN
ASAASAPLGANGAAAPVGSAAANGSAPATVTTQTTGAPSPADVSSTQPAETTAPIAGGGA
SPTPPLAAGNTTGATPPLASASTGAGATSPTPPLATAGAASATPPFAPAGTTAPAAPPDT
VLGAETARAAGMADSTPATRATDLSAAGGAAGAAGAAAGGGGGAGASGIAAVAGGGTLAA
IAQQASTASTVLSSASTLASGGVSANVGAAIVPVMTQALNAAGDRAAALSSAVDTLFSLP
DVKQANIPAVAGAILSMPGLSSSSVPGVIGAILQSPTLATETLPKVAEVLMKIPGVADSP
LPQIARDVLDTIGLGPVARTQGTNLPGGLPGPSGSGRVVPSVSTYRGRQDGARLQYVNLE
RADERWNDGNALTTTERQTRRPRIHVEFNRPGAHRFTITVKADAGNIAYSSRERGRRASY
QEPHANPRSYVTDADGTRIVDDIDLPAAGRNVYLFEVRDERGQLIKTERVETARRLYIQE
VMCMSARPANHLADVTPVTAEFALHGIDMIQLPRLQFRGRSAVDAADNVDAQQAIMDAVR
RVYATSPGKQREPYTLVVCHVDRLAAPGTSGDMRLPVPAGPGGRVMTVPIVNDDRTLASL
WYEFDDSDDWLVHARYLYTDASGAERSIPIPRHLMTPLRESSGAVFSVKVDLTQISSTPL
NGVLNIQFNTVAASYAGLAITGTNLLFVSTLDPYVPNSQAYLTETLAHEMGHLLGMVPSG
PDWPGLRNEDSSADDSKLDPPQYFYYNMGGHCYFGLPNRNGQYSDEIGQCVMYGITCANI
HFCPSCSKAVRKVDCSEGWTSF
NT seq
8349 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccttgccttcgaacgccccggcctactcgtcattgaacatcgccacgctgtcg
cagcaggcgcgcctgctgcgcctggacaccccgctgaacgccgaactcgtggtcgaacac
ctgaacctgcgcgaaggcgtgtcgcgcctgttctcgctgacgctggactgcctggcggcc
agcgccgaagtggacgtgagcgcgttgctgggcaaggagatcagcgtcagcctgctgcag
gccgatggcgcgatgcggcggtggcacgcggtggtggaaggggtggacgcgctgggcgcc
gacggcggactggcacgtttccgcctgcatgccgcgccgtggatggccgcgctggcgttg
cggcgcgacagcttcatctaccaggacctgtcggtgcaggacatcgtcagcgaggtgttt
tcggattatccccaggccgcgttcgcctttgaattgagccaggcgctggagccgcttgcc
gtctgcacgcagtatcgagagtcggacctggcgttcgtcgaacgcatcctggccgaggcg
gggctgagctatcgcttcgaacatcaacaggacgacggccagtccaccagcggcggcgcg
cgccaccgcgtggtgatcttcgacgccgacgccgcgcgcccgcaggacccggcctcgccc
ttgcgctttcaccgtagcgacgcgaccgaaacaagcgacagcatcacccggtttgccgcc
cggcaggccgtgcggcccaaccgcgtggcgcgcgccgcctggaacgagcgcacgctgaac
gcgcacgccgcgcagagccagtcgcaggtgcaggtggaatcgctgcccgtccttgaagac
tacgactacgacggtcatggccgctatggcgatgacgacgcggccgagcagagcgccgcg
cgggcgctgcgcgcccatgaatccgaagtggtgcgctttgagggcgcgggcaccgcccgc
tcgctggcggcagggcacgtgttcgcgctgagccagcacgcacgctacgccgaaggcggc
ggcggacaggccgccgacgaactgggcggcaaccgttacgtggtgctggacgtgacgcac
gaagccacgaacaacctgggcagccaggccgcgcaggtgttgaacaccccggacatggag
cgcggcacatatcgcaatgtcttcgccgcgcagcccgacgcggccgcgttgatgcccgcg
tggcgcgcgcgccccacggcgccggaaagcctggctgccgtggttgtcagcgcggccgat
gcgcccatcaccgccgaccgcgacctgcgcgtcaaggtgcagtttccgtggcagcgcggc
gaaaagccgctgccgggcggcctgccgcatcgcacgcatggcgatgccagcggcaatgcg
cccggcgatgaccgctcgggcacgtggctgcgcgtggccagtgcgcaggcgggcccgaac
tggggcgcgcatcacctgccgcgcgccggcaccgaggtcatcgttgaattcatcgacggc
gatatcaaccagcccgttgtcgcggggcagctctacaacgatgcggatctgccgccctgg
tccgccggcgaagacggcgacgccaatcacgccggcgtgttgagcgggtggcacagccag
ggcctggatggcgcgggccgcaaccaatggctgttcgacgacaccaagggcaagctgcgc
acgcgcctggccagctccaccgcggtcacgcaactgggcctgggctatctggtggaacag
gatctggacgacgccagccgcggccaatggcgcggcaccggctttgaactgcgctcggat
gcgtggacggtcgtgcgttccggtcagggcatgctgttgtcggccaccgcgcgggaacaa
ggcaagtcgacgcaagccgatgcagaggaggccttgctgctgctgcgcggcgcgcaggac
gcttcgcgccggttgaacgacagcgcgggccagcacaaggcgcgcccgctggcggcgtcc
gaaggctacgacgacctgctcaaggcgctggaccccaagctggaaggccgctacgccgcc
caggtgaacgggcaggccgcaggcaaggccgccgacgggaaacgcaccggcgaggccgcc
gtcgagcgcatcaacggcccgcatctgttgatcgattcgccgaactcgctgaacctggcc
acgccggccagcgccgtgttgcacgcgggagaacacctgcacgccacggcgcagtccgat
gcgcatgtggccgccacgcaaacctatgcggcggtgtcggcgcggtcggccagcgtgttc
gcgcagcaaggggcgatacgcgcggtgtcggcgcacgcgcccgtgtcgctgcacgcccac
accgacattctggaagccctggcggggcaggacatcaccgtcacgtcatcggccgaaggc
atcgagatcctgggccagcagcgcgtcaccttgcaggcagcgggcggcagcgtcatcctc
gacggcgccgatatcgtcttcaagggaccggggctgttttcggtcaagggcgccacgcac
aacttcgtcggccccggcagcgatgccgccgcgctgccggcgctgcccagcaccacggtc
gacgacccgctgatcgtcagcgcagagcttatccacaaggacggcgccctggcctcggcc
gccaaaaaggccagcaccagcctgatggccggttttggcggcgcggcgggtgcgggcggg
ggcctgggcggattgggcgaccttgcgcccagcggcttgggcgacctgggcaagacggcc
gccggcgcggcggccaagctctcgcaatttgccggccaggcaaacacattggccgggctg
gcgaaaaatcccatgggcgcgttgtcgcaggcgccgggcttgctcggcggcatgggttcg
acgccctccgccgtgggaggcttgctgaacacggccaagaacacgatgggcatggtgtcg
caggcgcaagccatgatcgccaacccgatgtccgcgctgcccgccgcctccggcatgctg
gcgtccgtcgcgcccggcgcgggcggcatgatcgacggcgcgacagcagccgttggcacg
gtctccaaggcggctgaatgggtcaaggaccccaccgccgccctgcccgccgcaaccgac
atgctggcctcggccgcgcccgaaggcgcgtccaagatgatcacgagcgccgcgtcgatc
gcgggactgggcaagggtgcagaggtaggttcgggcgcggggcttggcgccgacggcgga
ctgacgggcgcggccgcgacgccgtccttcgcgccgacggggaccggtgctgcgcaatcg
gcggctgcaggatcggcgccagcgtcggcatcaagcccgatgactgcggcgagtgcgtcg
ccagccgccgacccggcaggcgcaggtgcaccggctacggcagggacatcggcaacggca
ggtgcgtcggctactgcaggtgcatcgggaacggcaggtgcatcgggaacggcaggcgca
tcgacgcaggccacggcttccgcgaccacggcaacaacgccatccgcggcccccgccgcc
acagcgaccgcggcatcgcccgcaggcgccatggctgacaacggtgcgcatccgaccagc
ggcaccctgcgagcgccgtccacatccgacgccgcaacacaaacgcccacgcttgccacg
gcagcggccggcagcagcgccgcgtctgcaattccttcccaagcaagcaccagcgccgcg
tctgcaattccttcccaagcaagcaccagcgccggcgtgggaactagctctggcgcgggc
gcgggcatcgcttcagtcgctggtgcgggtgtcgcatcgggcgcaaccctggcaggcaca
agcatcgcgtccaatgcgtcgctcgccagtgcggacaccggcgtcgcctccggcatgttc
ctggcagatgcgaacccgggcattgcatccggcacgtccttcacaagcgcggacgcaggt
attgcctccggcacgtcccttgcaaacgcggacgccggcattgcctccgccacttccctc
gcaagcgcggacgccggtataacccccgccgcgtcccttgcaaacacagacgccggtgtt
gcctccgccgtgacctccgcaagcgcggacgaccttctggcatccggcgctgcggacgct
ggcgttgcgtctgccatcgccacctcaagctccggcacggccgtcccgtccatcgcgtcg
gctgctggcggcgccgccgcttttgctgcaggcgcaacgggagtcggcatcccggccacg
ggcgcgctggctgcctcgttggcgggccgcagcagttcggcgtccgcagcgatgcccatc
gcgacccaatcgggatcggggtcggggtcggagtcggtgtcgggatcgggatcgggatcg
gcgtttgactcgcaagcgtccaaggcaggcgggcccgctttcggctcgtcctcatcagac
acgtccacgtccgctacgcaatccgacgctgccgcccgctcgcatctctcccccatcgcg
ggcacggaagcgaccggccgcatcgaggcggacgccaggacggcgccgggctcgacccac
gacgcggcgccgtccgcgtccatggccgcgcagggccacgcccgtcaggctgagggatcg
ggagccgccatcggcctgctcgccgccgccgccggaaccgtggccgcgacgacgtcccgt
cgtacgcacgccccggaaggcgaagacgccacgcatcgcgcgcaggtcgacccgacacgt
atcggcgccgccgccgcgggactggcgcccgcgttcacgcaaggatcgacaacccagcat
ctgggcgcgtcgcctgacgcgcatccctcgaccggcccagccccgcatcacgatcacacg
gcggaacgggacgagcagaccacccaagcggaacagaccgctcgggacgcgcgcgactgg
cttgcgcgcggcacgtccgcccaccgcgaaggcggcggcgacacagcgtccggcgtacac
gcaagccagcgtgccgatgcccccgtggccgccggcgcgcccgctgcgcgcgggccgatg
aacgcctccgctcatgacgcggctgccgccgcgcagcaggacgacgcgaccaaggagcgc
agcccggctacgaatgccgcgctgctcgcgtccattgcggcgggcgcaggtagtctgttg
agcgccacctctgccgcggccagcagcgtcacgcaagcggcgtccggctcgaccgccgcg
ccgggcagtctgcccgatgcattggcgttgccgactggcgcgccctccgttgcggcgccg
agcgtgccggtcgcgtctgacgcggcgataagcgggttgccggtctcctccggcgccacg
gccccgggcgctgccctggccggcacgccgtcgctgcccgaatcggccggtgttttcacc
acgccgcccttgcctggcgcggcgccgcaaacgcccggcttcgtgcctgcgcccggcgag
agcctgccgcggggaaccgggttgcccggtacgaccggggacgatactttcgggcttccg
aacatcgaagcctctcccagcccgtccgtcgccgtcggcgcggcgggcgcgggagcggcg
gttgacgcggccgcgacaagcggcgccgcgacctcgacccttcccgcagccacgggcggc
atcgccagcgcgggtccgctcgcaggaacaggcgcggttgcaggttccgcgggcgcttct
ccccgtttggcaactgccgacgtcagcgaaggcacggcggcacgcgccggaatagagaca
ggctcagcagatgcaggtgttggcgcaggtgctgttgctggtgcagcaggtacgggtgcc
ggtgcaggttctggcacaggtgctggagctggtgctggtacagcaggtgcgggcgtaggc
gcagcagatgcaggcgcaggggcaatccccggcgccgacgcgaccgcaagttcaccgaac
gcctcggcggcctccgctcccttgggcgcgaatggtgcggccgcgccggtcggttccgca
gcggccaatggcagcgcaccggcaaccgtcaccacgcaaactaccggcgcgccctccccg
gcggacgtctcttcgacgcaacccgccgagaccaccgcccccatcgctggcggcggcgcc
agcccaacgcctccccttgccgccggcaacaccaccggcgcaacgccgcccctggccagc
gccagcaccggcgccggtgccaccagcccaacgcctcccctcgcaacggctggcgccgca
agcgccacgccgccctttgcgccggccggaaccacagcccctgccgccccgccggacacc
gtgctcggcgccgaaaccgcccgcgcggcgggcatggccgacagcacaccggcaacccgc
gcgacggacctgtcagccgcaggcggtgcagccggtgcagccggcgctgccgcgggcgga
ggtggcggcgccggggcgtccggcattgccgccgtggctggcggaggcaccttggcggcc
atcgcgcagcaggccagcaccgcctctaccgtgctatctagcgccagcacgctcgccagc
ggcggcgtcagcgccaacgtcggcgcggccatcgtgcccgtcatgacgcaagcgctgaac
gcggcgggtgaccgcgccgccgcgctgagttcagccgtggacacgctgttctcgctgccc
gacgtgaagcaggccaacattcccgccgtggccggcgccattctcagcatgccgggcttg
tcgtcctcgtcggtgccgggcgtcattggcgccatcctgcaatcgcccacgctcgccacc
gaaacgctgcccaaggtggccgaggtgttgatgaagatcccgggcgtggcggattcgccg
ctgccgcagatcgcgcgggacgtgctggacacgatcggactgggcccggtcgcccgcacg
cagggcaccaatctgcctggcggcctgcccggcccgtccggctccggacgtgtggtgccc
agcgtctccacgtatcgcggccgccaggatggcgcgcgcctgcaatacgtcaacctggaa
cgcgcggacgaacgctggaacgacggcaacgcgttgaccaccaccgagcggcagacccgc
cgcccgcggatccacgtggagttcaaccgtccgggcgcgcaccgcttcaccatcaccgtc
aaggccgacgccggcaacatcgcctactccagccgcgagcgcggccgccgcgccagctac
caggagccgcacgccaacccgcgcagctacgtcacggacgccgacggcacccgcatcgtc
gatgacatcgacctgcccgccgccggccgcaacgtctacctgttcgaggtgcgcgacgaa
cgcggccagctcatcaagacggagcgcgtcgagaccgcgcgccgcctgtatatccaggaa
gtgatgtgcatgagcgcccgcccggcgaaccatctggccgacgtgacgccggtcaccgcg
gaattcgcgctgcacggcatcgacatgatccagctgccgcgcctgcaattccgcggccgc
tcggcggtggatgcggcggacaacgtcgacgcgcagcaggccatcatggacgccgtgcgc
cgcgtgtacgccacctcgcccggcaagcagcgcgagccttacacgctagtggtgtgccac
gtcgaccggctggccgcgcccggcaccagcggcgacatgcgcctgcccgtgccggccggc
ccgggcggacgcgtgatgacagtgcccatcgtcaacgacgaccgcacccttgccagcctc
tggtacgagttcgacgacagcgacgactggctcgtccacgcccggtacctctacaccgac
gcgtcgggcgcggaacgttcgattcccattccgcgccatttgatgacgccgctgcgcgaa
agctccggcgccgtcttctccgtgaaggtcgacctgacccagatttcgtccacgcccctg
aacggcgtgctgaacatccagttcaacacggtcgccgcgagctatgctggcctggccatc
accggcaccaacctgctgttcgtgtccacgctggatccctacgtccctaactcgcaggcg
tacctgacggaaacgctggcccacgaaatgggccacctgctcggcatggtgcccagcggc
cccgattggcccggcctgcgcaacgaagactcctcggccgacgattccaagctggatccg
ccgcagtacttctactacaacatgggaggacactgctactttggcctgcccaaccggaac
ggccagtacagcgatgagatcgggcagtgcgtgatgtacggcatcacctgcgccaacatc
cacttctgcccgagttgcagcaaggccgtgcgcaaggtggactgctcggaaggctggact
tcattctga
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integrated database retrieval system
