Achromobacter sp. JD417: LN047_25885
Help
Entry
LN047_25885 CDS
T11120
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K11908
sigma-54 dependent transcriptional regulator
Organism
achj Achromobacter sp. JD417
Brite
KEGG Orthology (KO) [BR:
achj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
achj03000
]
LN047_25885
Transcription factors [BR:
achj03000
]
Prokaryotic type
Helix-turn-helix
Other families
LN047_25885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
HTH_8
bpMoxR
Mg_chelatase
HTH_50
IstB_IS21
AAA_16
AAA_3
Motif
Other DBs
NCBI-ProteinID:
XGB27225
LinkDB
All DBs
Position
complement(5645546..5647108)
Genome browser
AA seq
520 aa
AA seq
DB search
MSLSAQGAAALARTLVQASGVASLADRFFSGVCSTPSIRYGVCYWPETAGDSIRPIASHG
VALDMLPAYPLQDLDNPIVYCLTTGQTRHVARVDSLCGVEGGYEELREKLAAADTWLVVP
LLDARRKADAVLLLAGAAPALHAWMADPTWQELCRLFDAVLTGLRDRLGSDERVQTRQGM
LAQQSETRGRRRLLSAGFIGVGPAARRLREDMLRFADSSLSLLVTGETGAGKDHAAWLIH
QASARKGKFVPVNCAAIPKDLIEAELFGAVRGAYTGATQARTGLVAEADGGTLFLDEIGD
MPLSLQGTLLRLLNEKKYRPVGATRELPSDFRLVCATHRALADLVRDGQFREDLYFRIRQ
LTLHIPPLRDRLEDIPALVANILLEHNRSFPGRVAGISDNAMAQLQRHRFPGNVRELRSL
VLAAAERTPAGKRIQTNRLVELTRGEHAPENDETGDAILQRLWHTNNLPEALAAFERLLL
EDRLRQAAGSRRVAAQSLGIPKRTLARKCLDLNLTGEEAI
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgagtgcccaaggcgccgccgcgctcgcacggacattggtgcaggccagcggc
gttgcgtcgctggccgaccggttcttctcaggcgtttgctccacgccaagcatacgttac
ggggtttgctattggccggagacggcgggagacagtatccggccaattgccagccatggc
gtggcgctcgatatgctgccggcctatcccttgcaggacctggacaatcccatcgtttac
tgtctgacgaccggtcagacgcgtcatgtcgcgcgcgttgatagcttgtgtggcgtcgaa
ggcgggtacgaggagcttcgcgaaaagctggcggccgctgatacgtggctggtcgtgccg
cttctggacgcgcgccgcaaggccgatgccgtgctgcttctggccggcgcggcgcccgca
ctgcacgcatggatggcagacccgacatggcaagagttgtgcaggttgtttgacgcggtg
ctgactggcctgcgcgatcgcttgggctcggacgagcgggtgcagacccgtcagggcatg
ctggcgcagcagtcagagacacgaggacgccgccgcctactgtctgccggcttcatcggc
gtcgggcccgccgcacggcgactgcgcgaagacatgctgcgtttcgccgactcttccttg
tcgctgcttgtcacaggcgagacgggcgccggcaaggaccacgctgcatggctgatacat
caagcctccgcgcgcaagggcaaatttgtgccggtcaattgcgcggccattcccaaggat
ctcatcgaggccgaactatttggcgctgtccgcggcgcctacaccggcgcgactcaggct
cggacaggcctggtcgccgaagccgatggaggcacgctgtttctggacgagatcggcgat
atgcccttgagtctgcaggggactctgctgcgcctgctcaatgaaaaaaaataccggcca
gtgggcgcgacacgagagcttccttccgactttcggctggtctgcgcaacccatcgcgcc
ttggcggatctggtgcgggatggccagttccgcgaagacctgtacttccgcattcgccag
ctgacgctgcacattccccccttacgcgaccgcctcgaagacatcccggcgctggtggcc
aacattctgcttgagcacaaccggtcctttcccgggcgggttgccggaatttccgacaac
gcgatggcgcagctccagcgccatcgtttcccgggcaacgtcagggagctgcgcagtttg
gtgctggcagcggcagagcgcacacctgcgggcaagcgtatccagaccaaccggctggtt
gagctgacgcgcggcgagcacgcgccggagaacgatgagacgggagacgccatcctgcag
cgtttatggcacaccaacaaccttcccgaagcgcttgccgcgttcgagcgcttgttattg
gaagaccgtctacggcaggccgcggggtcgcgccgtgtggccgcgcagagtttgggcatt
cccaaacgcaccttggcgcgcaaatgcctggatctgaatctgactggagaggaagcaata
tga
DBGET
integrated database retrieval system
