Acanthisitta chloris (rifleman): 103797935
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Entry
103797935 CDS
T08456
Symbol
COL4A6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl04382
Cornified envelope formation
achl04510
Focal adhesion
achl04512
ECM-receptor interaction
achl04518
Integrin signaling
achl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103797935 (COL4A6)
04518 Integrin signaling
103797935 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103797935 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103797935 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103797935 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
achl04147
]
103797935 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
achl00536
]
103797935 (COL4A6)
Exosome [BR:
achl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103797935 (COL4A6)
Glycosaminoglycan binding proteins [BR:
achl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103797935 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103797935
NCBI-ProteinID:
XP_009068420
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search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NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
ggtcgaccaggtccaattggacttcaaggaccaataggagcacctggatttactggccca
gaaggtttgccaggagcaaaaggtgagagaggagcagtgggcccccctggaccagctgga
cagaaaggtgacaagggtccaatgggagttccaggatttcaaggcatcaacgggatccca
ggtcaccctgggcaatctggacctagaggtttgcctggcctcgatggctgcaatggtact
gttgggagtcctggcatttctggatcagatgggtttcctggcctacctggactgcccggt
cgtcctggcccaaaaggacttaaaggagaacctgtttttactcaaggcagtcttaaagga
atgaagggagaaaatggtcttcctggactggatggaattgctggccccaaaggttttcca
ggtccaataggttctgcaggccctataggattaccaggtttgcagggtccagtgggtccc
cctgggccaccaggtccaaaaggtaacatgggattaggctttcaaggagagaaaggagaa
aaaggcgatgtagggctgcctggtcctccaggtcccccaccatccactggaatactggaa
ttcatgggatttccaaaagggaagcaaggagaaaagggtgagccaggccctcaaggattc
cctggagtcaaaggattgcctggcatgccgggctttggaggtgttggagaaaaaggagaa
aaaggtgtgccaggcttacccggtggcaggggtcttttgggactggatggatctgatgga
atcccggggagaaagggccatccaggtgttccaggctatccaggactggatggagtagaa
ggcatgaagggtgaattaggtgacatcggtcccccaggccctcctgtcattattgacagg
gaaggtgtagtcatttcaggtgcccccggtgaccctggaaacccgggattacctggtcct
ccaggagatgaagggatcagtggtttaccaggccttcccggagctccagggtttccaggt
cttgagatagatggaatgggccctggagggtctccaggtattcctggtgtgaagggtgaa
gtgggagaaccaggaagaacaacagttggattaccaggccctccaggcagagatggttta
ccaggtctgccaggagcaccaggactgcctgggccaccacgcccttctttctccccagag
atgatcctgaatggaaggattggggccccaggggaacctggacaaagagggctgccagga
gctttgggtccaaagggctacaaaggagaggcaggtgattgtgcttgtgatggaggagtt
tcaagagctggtctaaaaggcatctcaggtccaccaggtccatcgggaagccctggtgtg
cctggtgctaagggcattggtggagacccaggcactgtgggtgcaccaggactgcgaggc
cctccggcttcagctggtcctcaaggtcttccaggccttaagggagaaaaaggggatcca
tcctatgcaacaggcaaaggtgctcgtggggaccgtggtgtgacagcacccagaggacct
tcaggcatcccaggaactcctggcagggatggacttccaggcttgccaggcccaccaggc
cctccaggtgatggtggactaggctttccaggtgaaaaagggctgccaggactacctggc
tccaagggccatcgtggagaaactggttctcctggtgttgggtatccaggccctagtgga
cttcgtggaccaccaggtgacccaggaatggatgggtttccagggcaagcaggtcttcca
ggccctccaggtatcaccttgccctgcatagttcctggagcatatgggcccccagggact
ccaggctttccaggactgccaggtcccaaaggcagcaaaggcttttctggccttccaggc
caacctggattacatgggtcaaaaggacagccagggtcaccaggaataataggcttgcaa
ggggaacctggcttccctggacctcgaggagagcaagggcctcaagggcttccaggattg
gatggaacagatggtttgcctgggaaaatgggtgcttcaggcttagctggaactaaagga
gctcctggagatgtatttggtgctgagagtggagccctgggagaacatggccgacctgga
ctcccaggtgataaagggcttacgggtgatattggatttccaggaccaaaagggctagat
ggcagaccaggccttctaggtattaaaggtgaacagggtcatccaggatattcaggtgtc
cctggattacggggtcctcctggtcctggaggtccttttggcattaagggaaagccaggg
cccctggggtcagttggtcttgcaggagcaccaggctgtcaagggcttcctggagtcaaa
ggcatgactggggatgtaggtccacaaggccctgctggtatgaaaggcttcccaggtctc
gatggtgctccaggatctcctggggaaagaggattcttagggccacctggatcttttggt
caagatggacgtccaggtttctctgggcccaaaggtgagaaagggtcttctggcctgctt
ggtttccctggcatgccaggactgcctggtgtccctggagtgaatgggtttaaaggaact
tctggcacagatggaggaaaaggaatccctggagttgtgggacttcagggtcaaaaaggt
gacagaggtgatgtaggtccacctggtcttcctgttcttgggactttagaacaggcactg
caaatcaaaggagacaaaggagatcctggattagctggacttggaggtttccctggacct
agaggtgataaaggaatccaaggaagccgtggacaacctggtttccctggtccagttggg
tcagcaagcaaagaaagaggtcttcatggtgacccaggcttgcctggtccatctggacaa
cctgggctgccaggacagaagggtgcacatggtatcataggatttccaggaatgacagga
gagaggggttcagatggcatcacaggaacacttggattcccaggacctattggcctccct
ggtccaaagggtaagaaannnnnnnnnnnnnnnnnnnntggcattgctggagtgaaagga
gagcgaggggacccagggttcccaggagagagagggagagaaggactcaagggtgaacca
ggctacccaggaaacactggggtaaatggacccaaaggaggcccaggagatcttggccaa
gaaggaccagcaggaatccctggaaatcctggactgagaggaatccctgggccaccagga
cctccaggacagccaggatctgttggattccctggagctcgtggaacagcaggacctaaa
gggtttcatggatttccaggtttaaatggtctgaatggcttgccaggcacaaaagggtct
cctggaacaccaggtctgagtgaggctggactgaaaggacctgcaggtctcccaggtcca
aagggtgaagaaggttctccaggcttgggtagaggagctgtaggattccctggaccaaaa
ggctcatcgggagacatgggtcctcctggtcctgtgggactgcctggttttccaggaaca
cctggagcttcaattccttctgatatacgtgggagacctggggatgctggccagccagga
actgatgggagttcaggtctcccaggtcctccaggaccacgagggccccctggcccagct
tctgaccaaggtgacacaggcagcccaggtttccctggtgttcttggcttgcgaggcatt
aagggtgatgtgggactcactggtccaattggacttcctggagcatctggattcaaaggt
gtcagaggtgagcctggccttatggggatgccaggtaaagatgggcctccaggggatcct
ggttatgctgggctgaaaggtgaaatgggccgtcgaggtctccctggcagaccagggcct
ccaggtataaccccacagccagaagaagtcacagcccctgcaggtttacctggtctgcca
ggaattgatggtgtccctggctttgatggagatcctggattccagggcccggctggaaaa
ccaggtgcaaaaggtctgccaggaagatctggcttgaaaggacgcgatggcttgcctgga
acacctggtgtagttggggatccaggacctgtgggtgccccaggaccacagggattcgaa
ggtgttgctgggaagccantgctgcctggtcggagtgtgggcgttggatacactttagtg
aagcacagtcagtcggaccaaatcccaccgtgtcccataggaatgaataagctgtgggat
ggatacagcttattgtacgtggaggggcaggaaaagtcacacaaccaggatctcggtttt
gctggctcgtgtttgcctcgcttcagcaccatgcccttcatttactgcaacatcaatgaa
gtgtgctactacgccagccgaaatgacaagtcctactggctctccaccactgctcctatc
cccatgatgccagtggacagtgttcagatcccacagtacatcagtcgttgttctgtatgt
gaagctccttgccaggctgtggctgtgcacagccaggacatcaccatcccacagtgtccc
ctgggctggcgcagcctatggataggatactccttccttatgcacaccgcggctggggca
gaaggtggaggtcagtccctggtctcacctggctcctgcctggaggatttccgtgctacg
ccgttcattgagtgcaatggtgcccggggaacatgccattactttgccaacaagtacagc
ttctggttgacaacggtggagcagtcccagcagttcgtcagtgctcctccctcagagacc
ctgaaggcaggacagctccgcacgcgggtcagccgctgccaggtgtgcatgaagaacttg
tag
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